ontoTools 1.15.0
Vince Carey
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ontoTools | | Last Changed Rev: 27716 / Revision: 29143 | | Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | [ OK ] | OK |
* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.2-bioc/meat/ontoTools.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'ontoTools/DESCRIPTION' ... OK
* this is package 'ontoTools' version '1.15.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ontoTools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating ontoTools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ontoTools-manual.tex ... OK
* checking ontoTools-manual.tex ... OK
installing R.css in D:/biocbld/bbs-2.2-bioc/meat/ontoTools.Rcheck
---------- Making package ontoTools ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing data files
preparing package ontoTools for lazy loading
Loading required package: graph
Loading required package: SparseM
Loading required package: GO
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: RSQLite
Loading required package: xtable
Creating a new generic function for "grep" in "ontoTools"
installing man source files
installing indices
not zipping data
installing help
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>>> Building/Updating help pages for package 'ontoTools'
Formats: text html latex example chm
A.csr text html latex chm
GDI text html latex example chm
LLGOMFcp text html latex chm
OOC-class text html latex example chm
SGDIvocab text html latex example chm
STMA text html latex example chm
accessMat text html latex chm
buildGOgraph text html latex example chm
compoundGraph-class text html latex chm
depthStruct text html latex example chm
gomfAmat text html latex chm
litOnto text html latex chm
namedSparse-class text html latex example chm
ontology-class text html latex example chm
ooMapLL2GOMFdemo text html latex chm
otkvEnv2namedSparse text html latex example chm
rootedDAG-class text html latex chm
semsim text html latex example chm
taggedHierNomenclature-class text html latex example chm
toDot-methods text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.2-bioc\meat\ontoTools.Rcheck\00_pkg_src\ontoTools\chm\ontoTools.chm
Compile time: 0 minutes, 0 seconds
21 Topics
179 Local links
0 Internet links
1 Graphic
Created d:\biocbld\bbs-2.2-bioc\meat\ontoTools.Rcheck\00_pkg_src\ontoTools\chm\ontoTools.chm, 43,866 bytes
Compression decreased file by 62,183 bytes.
adding MD5 sums
* DONE (ontoTools)