arrayMagic 1.17.2
Andreas Buness
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/arrayMagic | | Last Changed Rev: 28902 / Revision: 29143 | | Last Changed Date: 2007-11-25 08:43:29 -0800 (Sun, 25 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | ERROR | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | ERROR | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ ERROR ] | skipped | skipped |
| lemming | Windows Server 2003 (32-bit) / x64 | ERROR | skipped | skipped |
* checking for file 'arrayMagic/DESCRIPTION' ... OK
* preparing 'arrayMagic':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst456822998
---------- Making package arrayMagic ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
preparing package arrayMagic for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: vsn
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
installing man source files
installing indices
installing help
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \details
>>> Building/Updating help pages for package 'arrayMagic'
Formats: text html latex example chm
arrayData-class text html latex example chm
cbind.arrayData text html latex chm
cbind.exprSetRG text html latex chm
colCors text html latex example chm
controlledApply text html latex example chm
controlledSubsetting text html latex example chm
detectReplicas text html latex example chm
exprSetRG-class text html latex example chm
fdc text html latex example chm
interweave text html latex example chm
normalise text html latex example chm
plot.imageMatrix text html latex example chm
plotDistributions text html latex example chm
processArrayData text html latex example chm
processArrayDataObject text html latex example chm
qualityDiagnostics text html latex chm
qualityParameters text html latex example chm
readIntensities text html latex example chm
readpDataSlides text html latex example chm
removeSpots text html latex example chm
simpleApply text html latex example chm
slideMerge text html latex example chm
spatialLayout text html latex example chm
spotMerge text html latex example chm
visualiseHybridisations text html latex chm
visualiseQualityParameters text html latex chm
write.htmltable text html latex example chm
writeToFile text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\arrayMagic\chm\arrayMagic.chm
Compile time: 0 minutes, 1 second
29 Topics
247 Local links
1 Internet link
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\arrayMagic\chm\arrayMagic.chm, 71,849 bytes
Compression decreased file by 101,476 bytes.
adding MD5 sums
* DONE (arrayMagic)
* creating vignettes ... ERROR
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
Loading required package: survival
Loading required package: splines
****** Deprecation warning ***
* The package 'arrayMagic' is deprecated and will *
* not be supported after the retirement of the *
* exprSet class from Bioconductor. *
* Please consider using the NchannelSet class from *
* Biobase and functions from the limma and *
* arrayQualityMetrics packages. *
****************************************************
Read 9 items
Read 9217 items
Read 9217 items
Read 9217 items
Read 9217 items
Read 9217 items
Read 9217 items
Read 9217 items
Read 9217 items
Error: processing vignette 'arrayMagicVignette.Rnw' failed with diagnostics:
chunk 14 (label=visualiseHybridisations)
Error in if (!(mappingColumns[["Col"]] %in% colnames(spotAttr))) { :
argument is of length zero
In addition: There were 50 or more warnings (use warnings() to see the first 50)
Execution halted