arrayMagic 1.17.2
Andreas Buness
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/arrayMagic | | Last Changed Rev: 28902 / Revision: 29143 | | Last Changed Date: 2007-11-25 08:43:29 -0800 (Sun, 25 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | [ ERROR ] | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | ERROR | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| lemming | Windows Server 2003 (32-bit) / x64 | ERROR | skipped | skipped |
* checking for file 'arrayMagic/DESCRIPTION' ... OK
* preparing 'arrayMagic':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'arrayMagic' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: vsn
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
** help
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \details
Note: removing empty section \examples
Note: removing empty section \examples
Note: removing empty section \details
Note: removing empty section \details
>>> Building/Updating help pages for package 'arrayMagic'
Formats: text html latex example
arrayData-class text html latex example
cbind.arrayData text html latex
cbind.exprSetRG text html latex
colCors text html latex example
controlledApply text html latex example
controlledSubsetting text html latex example
detectReplicas text html latex example
exprSetRG-class text html latex example
fdc text html latex example
interweave text html latex example
normalise text html latex example
plot.imageMatrix text html latex example
plotDistributions text html latex example
processArrayData text html latex example
processArrayDataObject text html latex example
qualityDiagnostics text html latex
qualityParameters text html latex example
readIntensities text html latex example
readpDataSlides text html latex example
removeSpots text html latex example
simpleApply text html latex example
slideMerge text html latex example
spatialLayout text html latex example
spotMerge text html latex example
visualiseHybridisations text html latex
visualiseQualityParameters text html latex
write.htmltable text html latex example
writeToFile text html latex example
** building package indices ...
* DONE (arrayMagic)
* creating vignettes ... ERROR
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: affy
Loading required package: affyio
Loading required package: preprocessCore
Loading required package: limma
Loading required package: survival
Loading required package: splines
****** Deprecation warning ***
* The package 'arrayMagic' is deprecated and will *
* not be supported after the retirement of the *
* exprSet class from Bioconductor. *
* Please consider using the NchannelSet class from *
* Biobase and functions from the limma and *
* arrayQualityMetrics packages. *
****************************************************
Read 9 items
Read 9217 items
Read 9217 items
Read 9217 items
Read 9217 items
Read 9217 items
Read 9217 items
Read 9217 items
Read 9217 items
Error: processing vignette 'arrayMagicVignette.Rnw' failed with diagnostics:
chunk 14 (label=visualiseHybridisations)
Error in if (!(mappingColumns[["Col"]] %in% colnames(spotAttr))) { :
argument is of length zero
In addition: There were 50 or more warnings (use warnings() to see the first 50)
Execution halted