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BioC 2.14: INSTALL report for genefilter on moscato2

This page was generated on 2014-10-08 08:50:35 -0700 (Wed, 08 Oct 2014).

Package 316/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
genefilter 1.46.1
Bioconductor Package Maintainer
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/genefilter
Last Changed Rev: 90176 / Revision: 95116
Last Changed Date: 2014-05-09 15:54:26 -0700 (Fri, 09 May 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ OK ] OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS  OK 

Summary

Package: genefilter
Version: 1.46.1
Command: C:\cygwin\bin\curl.exe -O http://zin2/BBS/2.14/bioc/src/contrib/genefilter_1.46.1.tar.gz && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch genefilter_1.46.1.tar.gz && rm genefilter_1.46.1.tar.gz
StartedAt: 2014-10-07 18:36:16 -0700 (Tue, 07 Oct 2014)
EndedAt: 2014-10-07 18:36:57 -0700 (Tue, 07 Oct 2014)
EllapsedTime: 40.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://zin2/BBS/2.14/bioc/src/contrib/genefilter_1.46.1.tar.gz && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch genefilter_1.46.1.tar.gz && rm genefilter_1.46.1.tar.gz
###
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install for i386

* installing to library 'E:/biocbld/bbs-2.14-bioc/R/library'
* installing *source* package 'genefilter' ...
** libs
g++ -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c half_range_mode.cpp -o half_range_mode.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c nd.c -o nd.o
nd.c: In function 'gf_dist_binary':
nd.c:242:16: warning: unused variable 'w2' [-Wunused-variable]
nd.c:242:12: warning: unused variable 'w1' [-Wunused-variable]
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c pAUC.c -o pAUC.o
pAUC.c: In function 'pAUC_c':
pAUC.c:73:9: warning: operation on 'ta' may be undefined [-Wsequence-point]
pAUC.c:76:6: warning: operation on 'ta' may be undefined [-Wsequence-point]
pAUC.c:79:9: warning: operation on 'ta' may be undefined [-Wsequence-point]
pAUC.c: In function 'pAUC':
pAUC.c:141:5: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
pAUC.c:123:9: warning: unused variable 'i' [-Wunused-variable]
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c rowPAUCs.c -o rowPAUCs.o
rowPAUCs.c: In function 'ROCpAUC_c':
rowPAUCs.c:97:9: warning: operation on 'ta' may be undefined [-Wsequence-point]
rowPAUCs.c:100:6: warning: operation on 'ta' may be undefined [-Wsequence-point]
rowPAUCs.c:103:9: warning: operation on 'ta' may be undefined [-Wsequence-point]
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c rowttests.c -o rowttests.o
gfortran -m32     -O3  -mtune=core2 -c ttest.f -o ttest.o
g++ -m32 -shared -s -static-libgcc -o genefilter.dll tmp.def half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -lgfortran -LE:/biocbld/BBS-2˜1.14-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.14-bioc/R/library/genefilter/libs/i386
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'genefilter'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing to library 'E:/biocbld/bbs-2.14-bioc/R/library'
* installing *source* package 'genefilter' ...
** libs
g++ -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c half_range_mode.cpp -o half_range_mode.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c nd.c -o nd.o
nd.c: In function 'gf_dist_binary':
nd.c:242:16: warning: unused variable 'w2' [-Wunused-variable]
nd.c:242:12: warning: unused variable 'w1' [-Wunused-variable]
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c pAUC.c -o pAUC.o
pAUC.c: In function 'pAUC_c':
pAUC.c:73:9: warning: operation on 'ta' may be undefined [-Wsequence-point]
pAUC.c:76:6: warning: operation on 'ta' may be undefined [-Wsequence-point]
pAUC.c:79:9: warning: operation on 'ta' may be undefined [-Wsequence-point]
pAUC.c: In function 'pAUC':
pAUC.c:141:5: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses]
pAUC.c:123:9: warning: unused variable 'i' [-Wunused-variable]
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rowPAUCs.c -o rowPAUCs.o
rowPAUCs.c: In function 'ROCpAUC_c':
rowPAUCs.c:97:9: warning: operation on 'ta' may be undefined [-Wsequence-point]
rowPAUCs.c:100:6: warning: operation on 'ta' may be undefined [-Wsequence-point]
rowPAUCs.c:103:9: warning: operation on 'ta' may be undefined [-Wsequence-point]
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rowttests.c -o rowttests.o
gfortran -m64     -O2  -mtune=core2 -c ttest.f -o ttest.o
g++ -m64 -shared -s -static-libgcc -o genefilter.dll tmp.def half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -lgfortran -LE:/biocbld/BBS-2˜1.14-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.14-bioc/R/library/genefilter/libs/x64
** testing if installed package can be loaded
* DONE (genefilter)