Back to the "Multiple platform build/check report" A  B  C  D  E  F [G] H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 2.14: BUILD BIN report for genefilter on morelia

This page was generated on 2014-10-08 09:01:57 -0700 (Wed, 08 Oct 2014).

Package 316/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
genefilter 1.46.1
Bioconductor Package Maintainer
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/genefilter
Last Changed Rev: 90176 / Revision: 95116
Last Changed Date: 2014-05-09 15:54:26 -0700 (Fri, 09 May 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  WARNINGS  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  WARNINGS [ OK ]

Summary

Package: genefilter
Version: 1.46.1
Command: rm -rf genefilter.buildbin-libdir && mkdir genefilter.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh genefilter_1.46.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R genefilter.buildbin-libdir
StartedAt: 2014-10-08 02:55:43 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 02:55:54 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 11.2 seconds
RetCode: 0
Status:  OK 
PackageFile: genefilter_1.46.1.tgz
PackageFileSize: 1.294 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf genefilter.buildbin-libdir && mkdir genefilter.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh genefilter_1.46.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R genefilter.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=genefilter.buildbin-libdir genefilter_1.46.1.tar.gz'
>>>>>>> 

* installing *source* package ‘genefilter’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c half_range_mode.cpp -o half_range_mode.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c init.c -o init.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c nd.c -o nd.o
nd.c:242:16: warning: unused variable 'w2' [-Wunused-variable]
    double w1, w2; /* Weighted values */
               ^
nd.c:242:12: warning: unused variable 'w1' [-Wunused-variable]
    double w1, w2; /* Weighted values */
           ^
2 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c pAUC.c -o pAUC.o
pAUC.c:73:15: warning: multiple unsequenced modifications to 'ta' [-Wunsequenced]
            ta =  ta += ((x[i]-(*p))*(y[i]-y[i-1])/2) + ((x[i]-(*p))*y[i-1]);
               ˜     ^
pAUC.c:76:12: warning: multiple unsequenced modifications to 'ta' [-Wunsequenced]
                ta =  ta += ((x[i]-x[i-1])*(y[i]-y[i-1])/2) + ((x[i]-x[i-1])*y[i-1]);
                   ˜     ^
pAUC.c:79:15: warning: multiple unsequenced modifications to 'ta' [-Wunsequenced]
            ta =  ta += ((1-x[i-1])*(1-y[i-1])/2) + ((1-x[i-1])*y[i-1]);
               ˜     ^
pAUC.c:123:9: warning: unused variable 'i' [-Wunused-variable]
    int i;
        ^
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c rowPAUCs.c -o rowPAUCs.o
rowPAUCs.c:97:15: warning: multiple unsequenced modifications to 'ta' [-Wunsequenced]
            ta =  ta += ((x[i]-(*p))*(y[i]-y[i-1])/2) + ((x[i]-(*p))*y[i-1]);
               ˜     ^
rowPAUCs.c:100:12: warning: multiple unsequenced modifications to 'ta' [-Wunsequenced]
                ta =  ta += ((x[i]-x[i-1])*(y[i]-y[i-1])/2) + ((x[i]-x[i-1])*y[i-1]);
                   ˜     ^
rowPAUCs.c:103:15: warning: multiple unsequenced modifications to 'ta' [-Wunsequenced]
            ta =  ta += ((1-x[i-1])*(1-y[i-1])/2) + ((1-x[i-1])*y[i-1]);
               ˜     ^
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c rowttests.c -o rowttests.o
gfortran-4.8   -fPIC  -g -O2 -Wall  -c ttest.f -o ttest.o
ttest.f:47.12:

         dm=dm1-dm2                                                     
            1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
ttest.f:50.12:

         dm=dm1/dm2                                                     
            1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
ttest.f:59.13:

         tst=(dm1-dm2)/sqrt((1.d0/ng1+1.d0/ng2)*(dss1+dss2)/(ng1+ng2-2))
             1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
ttest.f:62.10:

      tst=(dm1-dm2)/sqrt(dss1/((ng1-1)*ng1)+dss2/((ng2-1)*ng2))         
          1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o genefilter.so half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/genefilter.buildbin-libdir/genefilter/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘genefilter’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (genefilter)


>>>>>>> 
>>>>>>> FIXING LINKS FOR genefilter.buildbin-libdir/genefilter/libs//genefilter.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "genefilter.buildbin-libdir/genefilter/libs//genefilter.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.3.dylib" "genefilter.buildbin-libdir/genefilter/libs//genefilter.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "genefilter.buildbin-libdir/genefilter/libs//genefilter.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "genefilter.buildbin-libdir/genefilter/libs//genefilter.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libquadmath.0.dylib" "genefilter.buildbin-libdir/genefilter/libs//genefilter.so"