SeqArray 1.4.0
Xiuwen Zheng
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/SeqArray | | Last Changed Rev: 88838 / Revision: 95116 | | Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | [ OK ] |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |
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### Running command:
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### rm -rf SeqArray.buildbin-libdir && mkdir SeqArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SeqArray_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SeqArray.buildbin-libdir
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>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SeqArray.buildbin-libdir SeqArray_1.4.0.tar.gz'
>>>>>>>
* installing *source* package ‘SeqArray’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_R_LINK -I/usr/local/include -fPIC -mtune=core2 -g -O2 -Wall -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_R_LINK -I/usr/local/include -fPIC -mtune=core2 -g -O2 -Wall -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_R_LINK -I/usr/local/include -fPIC -mtune=core2 -g -O2 -Wall -c CoreGDSLink.cpp -o CoreGDSLink.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_R_LINK -I/usr/local/include -fPIC -mtune=core2 -g -O2 -Wall -c ReadByVariant.cpp -o ReadByVariant.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_R_LINK -I/usr/local/include -fPIC -mtune=core2 -g -O2 -Wall -c SeqArray.cpp -o SeqArray.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o SeqArray.so ConvGDS2VCF.o ConvVCF2GDS.o CoreGDSLink.o ReadByVariant.o SeqArray.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/SeqArray.buildbin-libdir/SeqArray/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SeqArray)
>>>>>>>
>>>>>>> FIXING LINKS FOR SeqArray.buildbin-libdir/SeqArray/libs//SeqArray.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "SeqArray.buildbin-libdir/SeqArray/libs//SeqArray.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.2.dylib" "SeqArray.buildbin-libdir/SeqArray/libs//SeqArray.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "SeqArray.buildbin-libdir/SeqArray/libs//SeqArray.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "SeqArray.buildbin-libdir/SeqArray/libs//SeqArray.so"