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BioC 2.14: BUILD BIN report for SeqArray on morelia

This page was generated on 2014-10-08 09:06:15 -0700 (Wed, 08 Oct 2014).

Package 714/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SeqArray 1.4.0
Xiuwen Zheng
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/SeqArray
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]

Summary

Package: SeqArray
Version: 1.4.0
Command: rm -rf SeqArray.buildbin-libdir && mkdir SeqArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SeqArray_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SeqArray.buildbin-libdir
StartedAt: 2014-10-08 03:10:30 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 03:11:01 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 30.9 seconds
RetCode: 0
Status:  OK 
PackageFile: SeqArray_1.4.0.tgz
PackageFileSize: 1.34 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf SeqArray.buildbin-libdir && mkdir SeqArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SeqArray_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SeqArray.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SeqArray.buildbin-libdir SeqArray_1.4.0.tar.gz'
>>>>>>> 

* installing *source* package ‘SeqArray’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_R_LINK -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c ConvGDS2VCF.cpp -o ConvGDS2VCF.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_R_LINK -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c ConvVCF2GDS.cpp -o ConvVCF2GDS.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_R_LINK -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c CoreGDSLink.cpp -o CoreGDSLink.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_R_LINK -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c ReadByVariant.cpp -o ReadByVariant.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I. -DCOREARRAY_NO_FORCEINLINE -DCOREARRAY_R_LINK -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c SeqArray.cpp -o SeqArray.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o SeqArray.so ConvGDS2VCF.o ConvVCF2GDS.o CoreGDSLink.o ReadByVariant.o SeqArray.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/SeqArray.buildbin-libdir/SeqArray/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (SeqArray)


>>>>>>> 
>>>>>>> FIXING LINKS FOR SeqArray.buildbin-libdir/SeqArray/libs//SeqArray.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "SeqArray.buildbin-libdir/SeqArray/libs//SeqArray.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.3.dylib" "SeqArray.buildbin-libdir/SeqArray/libs//SeqArray.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "SeqArray.buildbin-libdir/SeqArray/libs//SeqArray.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "SeqArray.buildbin-libdir/SeqArray/libs//SeqArray.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libquadmath.0.dylib" "SeqArray.buildbin-libdir/SeqArray/libs//SeqArray.so"