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### Running command:
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### /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocParallel
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* checking for file ‘BiocParallel/DESCRIPTION’ ... OK
* preparing ‘BiocParallel’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX .
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(./Rd2.tex
LaTeX2e <2009/09/24>
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[]\T1/ptm/m/n/10 See \T1/fi4/m/n/10 showMethods{bplapply} \T1/ptm/m/n/10 for ad
-di-tional meth-ods, e.g., \T1/fi4/m/n/10 method?bplapply("MulticoreParam")\T1/
ptm/m/n/10 .
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[]\T1/ptm/m/n/10 See \T1/fi4/m/n/10 showMethods{bplapply} \T1/ptm/m/n/10 for ad
-di-tional meth-ods, e.g., \T1/fi4/m/n/10 method?bplapply("MulticoreParam")\T1/
ptm/m/n/10 .
[9] (/usr/share/texmf-texlive/tex/latex/base/utf8.def)
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[]\T1/fi4/m/n/10 logical(1)\T1/ptm/m/n/10 Flag to de-ter-mine in apply-like fun
c-tions (see e.g. [][]\T1/fi4/m/n/10 bplapply[][][]\T1/ptm/m/n/10 ) whether
[14] (/usr/share/texmf-texlive/tex/latex/base/utf8.def) [15]
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[]\T1/fi4/m/n/10 logical(1)\T1/ptm/m/n/10 Flag to de-ter-mine in apply-like fun
c-tions (see e.g. [][]\T1/fi4/m/n/10 bplapply[][][]\T1/ptm/m/n/10 ) whether
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[]\T1/fi4/m/n/10 logical(1) \T1/ptm/m/n/10 in-di-cat-ing whether forked chil-dr
en will be ter-mi-nated be-fore \T1/fi4/m/n/10 bplapply
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[]\T1/ptm/m/n/10 Make this the de-fault \T1/fi4/m/n/10 BiocParallelParam \T1/pt
m/m/n/10 for sub-se-quent eval-u-a-tions? If \T1/fi4/m/n/10 FALSE\T1/ptm/m/n/10
,
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\T1/fi4/m/n/10 registered(bpparamClass)\T1/ptm/m/n/10 . If \T1/fi4/m/n/10 bppar
amClass \T1/ptm/m/n/10 is miss-ing, use \T1/fi4/m/n/10 name <- names(registered
())[1]\T1/ptm/m/n/10 .
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[]\T1/fi4/m/n/10 logical(1)\T1/ptm/m/n/10 Flag to de-ter-mine in apply-like fun
c-tions (see e.g. [][]\T1/fi4/m/n/10 bplapply[][][]\T1/ptm/m/n/10 ) whether
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[]\T1/ptm/m/n/10 Use \T1/fi4/m/n/10 as(cl, "SnowParam") \T1/ptm/m/n/10 to co-er
ce a clus-ter cre-ated di-rectly by \T1/fi4/m/n/10 parallel::param \T1/ptm/m/n/
10 to a \T1/fi4/m/n/10 SnowParam
(./Rd2.ind [20]
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[]\T1/fi4/m/it/10 bpaggregate,data.frame,BiocParallelParam-method
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[]\T1/fi4/m/it/10 bpaggregate,formula,BiocParallelParam-method
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[]\T1/fi4/m/it/10 bparallelize,ANY,MulticoreParam-method
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[]\T1/fi4/m/it/10 bpbackend<-,DoparParam,SOCKcluster-method
[21]
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[]\T1/fi4/m/it/10 coerce,spawnedMPIcluster,SnowParam-method
[22] [23]) (./Rd2.aux)
LaTeX Font Warning: Some font shapes were not available, defaults substituted.
)
(see the transcript file for additional information)pdfTeX warning (dest): name
{Rfn.makeCluster} has been referenced but does not exist, replaced by a fixed o
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t, replaced by a fixed one
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t exist, replaced by a fixed one
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amsfonts/cm/cmsy10.pfb></usr/share/texmf-texlive/fonts/type1/urw/helvetic/uhvr8
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Output written on Rd2.pdf (23 pages, 215896 bytes).
Transcript written on Rd2.log.
Saving output to ‘/tmp/RtmpDL4H2w/Rbuild82152a050b3/BiocParallel/build/BiocParallel.pdf’ ...
Done
* creating vignettes ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building ‘BiocParallel_0.6.1.tar.gz’