BioC 2.13: CHECK report for OSAT on zin1

Package: OSAT

Version: 1.10.0

Command: /home/biocbuild/bbs-2.13-bioc/R/bin/R CMD check --no-vignettes --timings OSAT_1.10.0.tar.gz

StartedAt: 2014-04-05 02:53:15 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 02:53:44 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 29.5 seconds

RetCode: 0

Status:  OK

CheckDir: OSAT.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.13-bioc/meat/OSAT.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OSAT/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OSAT’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OSAT’ can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in ‘inst/doc’:
  ‘OSAT.Rnw’
A ‘vignettes’ directory will be required as from R 3.1.0
* checking examples ... [11s/11s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.13-bioc/meat/OSAT.Rcheck/00check.log’
for details.

* installing *source* package ‘OSAT’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (OSAT)

name	user	system	elapsed
BeadChip-class	0.016	0.000	0.018
BeadPlate-class	0.012	0.000	0.014
MSAroboticPlate-class	0.476	0.008	0.484
QC	1.728	0.004	1.736
create.optimized.setup	1.644	0.004	1.648
example.setup	0.052	0.000	0.054
gContainer-class	0.032	0.000	0.032
gExperimentSetup-class	0.092	0.004	0.095
gSample-class	0.028	0.000	0.026
gSlide-class	0.008	0.000	0.007
get.experiment.setup	1.764	0.000	1.769
multi.barplot	0.052	0.000	0.052
multi.chisq.test	0.024	0.000	0.022
optimal.block	2.428	0.000	2.430
optimal.shuffle	1.652	0.000	1.657