BioC 2.13: CHECK report for Cormotif on moscato1
This page was generated on 2014-04-05 09:50:23 -0700 (Sat, 05 Apr 2014).
Cormotif 1.8.0 Yingying Wei
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/Cormotif | Last Changed Rev: 81642 / Revision: 88450 | Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | |
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ OK ] | OK |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
Summary
Package: Cormotif
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Version: 1.8.0
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Command: rm -rf Cormotif.buildbin-libdir && mkdir Cormotif.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Cormotif.buildbin-libdir Cormotif_1.8.0.tar.gz >Cormotif-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=Cormotif.buildbin-libdir --install="check:Cormotif-install.out" --force-multiarch --no-vignettes --timings Cormotif_1.8.0.tar.gz && mv Cormotif.buildbin-libdir/* Cormotif.Rcheck/ && rmdir Cormotif.buildbin-libdir
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StartedAt: 2014-04-05 03:16:34 -0700 (Sat, 05 Apr 2014)
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EndedAt: 2014-04-05 03:18:15 -0700 (Sat, 05 Apr 2014)
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EllapsedTime: 101.0 seconds
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RetCode: 0
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Status: OK
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CheckDir: Cormotif.Rcheck
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Warnings: 0
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Command output
* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/Cormotif.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Cormotif/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Cormotif' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Cormotif' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
'affy'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
'CormotifVignette.Rnw'
A 'vignettes' directory will be required as from R 3.1.0
* checking examples ...
** running examples for arch 'i386' ... [14s] OK
** running examples for arch 'x64' ... [17s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
'D:/biocbld/bbs-2.13-bioc/meat/Cormotif.Rcheck/00check.log'
for details.
Cormotif.Rcheck/00install.out:
install for i386
* installing *source* package 'Cormotif' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'Cormotif' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Cormotif' as Cormotif_1.8.0.zip
* DONE (Cormotif)
Cormotif.Rcheck/examples_i386/Cormotif-Ex.timings:
name | user | system | elapsed
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cormotiffit | 1.85 | 0.00 | 1.85 |
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cormotiffitall | 0.7 | 0.0 | 0.7 |
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cormotiffitfull | 1.72 | 0.00 | 1.72 |
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cormotiffitsep | 1.26 | 0.00 | 1.26 |
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generank | 1.74 | 0.00 | 1.73 |
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plotIC | 2.22 | 0.01 | 2.23 |
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plotMotif | 2.29 | 0.02 | 2.31 |
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Cormotif.Rcheck/examples_x64/Cormotif-Ex.timings:
name | user | system | elapsed
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cormotiffit | 1.85 | 0.02 | 1.87 |
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cormotiffitall | 0.67 | 0.00 | 0.67 |
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cormotiffitfull | 1.90 | 0.00 | 1.91 |
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cormotiffitsep | 2.09 | 0.00 | 2.09 |
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generank | 2.68 | 0.03 | 2.73 |
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plotIC | 2.01 | 0.00 | 2.02 |
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plotMotif | 2.17 | 0.01 | 2.19 |
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