BioC experimental data: CHECK report for HD2013SGI on moscato2

Package: HD2013SGI

Version: 1.00.1

Command: rm -rf HD2013SGI.buildbin-libdir && mkdir HD2013SGI.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=HD2013SGI.buildbin-libdir HD2013SGI_1.00.1.tar.gz >HD2013SGI-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=HD2013SGI.buildbin-libdir --install="check:HD2013SGI-install.out" --force-multiarch --no-vignettes --timings HD2013SGI_1.00.1.tar.gz && mv HD2013SGI.buildbin-libdir/* HD2013SGI.Rcheck/ && rmdir HD2013SGI.buildbin-libdir

StartedAt: 2013-07-14 13:29:49 -0700 (Sun, 14 Jul 2013)

EndedAt: 2013-07-14 13:44:39 -0700 (Sun, 14 Jul 2013)

EllapsedTime: 889.6 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: HD2013SGI.Rcheck

Warnings: 1

* using log directory 'E:/biocbld/bbs-2.12-data-experiment/meat/HD2013SGI.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HD2013SGI/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HD2013SGI' version '1.00.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HD2013SGI' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 526.9Mb
  sub-directories of 1Mb or more:
    data  524.1Mb
    doc     1.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: package needs dependence on R (>= 2.10)
* checking installed files from 'inst/doc' ... NOTE
The following files should probably not be installed:
  'Makefile', 'whbiocvignette.sty'
The following directories should probably not be installed:
  'src'

Consider the use of a .Rinstignore file: see 'Writing R Extensions',
or move the vignette sources from 'inst/doc' to 'vignettes'.
* checking examples ...
** running examples for arch 'i386' ... [76s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
featuresPerWell 56.46   0.78   57.33
datamatrixfull  11.37   0.04   11.42
** running examples for arch 'x64' ... [70s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
featuresPerWell 46.72   0.70   47.42
datamatrixfull   9.94   0.22   10.16
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  'E:/biocbld/bbs-2.12-data-experiment/meat/HD2013SGI.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'HD2013SGI' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'HD2013SGI' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HD2013SGI' as HD2013SGI_1.00.1.zip
* DONE (HD2013SGI)