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Package 530/658HostnameOS / ArchBUILDCHECKBUILD BIN
ReportingTools 1.99.3
Jason A. Hackney , Gabriel Becker
Snapshot Date: 2013-03-24 17:01:43 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ReportingTools
Last Changed Rev: 74740 / Revision: 74774
Last Changed Date: 2013-03-23 06:30:49 -0700 (Sat, 23 Mar 2013)
george2 Linux (Ubuntu 12.04.1 LTS) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: ReportingTools
Version: 1.99.3
Command: rm -rf ReportingTools.buildbin-libdir && mkdir ReportingTools.buildbin-libdir && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ReportingTools.buildbin-libdir ReportingTools_1.99.3.tar.gz >ReportingTools-install.out 2>&1 && E:\biocbld\bbs-2.12-bioc\R\bin\R.exe CMD check --library=ReportingTools.buildbin-libdir --install="check:ReportingTools-install.out" --force-multiarch --no-vignettes --timings ReportingTools_1.99.3.tar.gz && mv ReportingTools.buildbin-libdir/* ReportingTools.Rcheck/ && rmdir ReportingTools.buildbin-libdir
StartedAt: 2013-03-25 04:28:37 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 04:38:57 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 620.6 seconds
RetCode: 0
Status:  OK  
CheckDir: ReportingTools.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/ReportingTools.Rcheck'
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ReportingTools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ReportingTools' version '1.99.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ReportingTools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... [13s] OK
** running examples for arch 'x64' ... [18s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'runTests.R' [101s]
 [102s] OK
** running tests for arch 'x64'
  Running 'runTests.R' [116s]
 [117s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

ReportingTools.Rcheck/00install.out:


install for i386

* installing *source* package 'ReportingTools' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'objectToHTML' with signature 'object="trellis"': no definition for class "trellis"
in method for 'objectToHTML' with signature 'object="ggplot"': no definition for class "ggplot"
No methods found in "GenomicRanges" for requests: summary
in method for 'publish' with signature 'object="trellis",publicationType="HTMLReport"': no definition for class "trellis"
Note: no visible binding for '<<-' assignment to '.->.basePath' 
Note: no visible binding for '<<-' assignment to '.->.handlers' 
Note: no visible binding for '<<-' assignment to '.->.report' 
Note: no visible binding for '<<-' assignment to '.->.reportDirectory' 
Note: no visible binding for '<<-' assignment to '.->.shortName' 
Note: no visible binding for '<<-' assignment to '.->.title' 
Note: no visible binding for '<<-' assignment to '.reportDirectory' 
Note: no visible binding for '<<-' assignment to '.->.basePath' 
Note: no visible binding for '<<-' assignment to '.->.handlers' 
Note: no visible binding for '<<-' assignment to '.->.modifyDF' 
Note: no visible binding for '<<-' assignment to '.->.report' 
Note: no visible binding for '<<-' assignment to '.->.reportDirectory' 
Note: no visible binding for '<<-' assignment to '.->.shortName' 
Note: no visible binding for '<<-' assignment to '.->.title' 
Note: no visible binding for '<<-' assignment to '.->.toDF' 
Note: no visible binding for '<<-' assignment to '.->.toHTML' 
Note: no visible binding for '<<-' assignment to '.reportDirectory' 
** help
*** installing help indices
** building package indices
** installing vignettes
   'basicReportingTools.Rnw' 
   'microarrayAnalysis.Rnw' 
   'rnaseqAnalysis.Rnw' 
   'shiny.Rnw' 
** testing if installed package can be loaded
No methods found in "GenomicRanges" for requests: summary

install for x64

* installing *source* package 'ReportingTools' ...
** testing if installed package can be loaded
No methods found in "GenomicRanges" for requests: summary
* MD5 sums
packaged installation of 'ReportingTools' as ReportingTools_1.99.3.zip
* DONE (ReportingTools)