Back to the "Multiple platform build/check report" A [B] C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 78/609HostnameOS / ArchBUILDCHECKBUILD BIN
birta 1.2.0
Benedikt Zacher
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/birta
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: birta
Version: 1.2.0
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch birta_1.2.0.tar.gz
StartedAt: 2013-03-24 22:45:22 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 22:46:24 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 62.4 seconds
RetCode: 0
Status:  OK 
CheckDir: birta.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/birta.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'birta/DESCRIPTION' ... OK
* this is package 'birta' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'birta' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

birta.Rcheck/00install.out:

* installing *source* package 'birta' ...
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c BayesNetwork.cpp -o BayesNetwork.o
BayesNetwork.cpp: In constructor 'BayesNetwork::BayesNetwork(int, int, int, char**, char**, char**, int**, double***, double***, int, int, std::list<int, std::allocator<int> >*, std::list<int, std::allocator<int> >*, std::list<int, std::allocator<int> >*, std::list<int, std::allocator<int> >*, double, double, double, double*, double*, double**, double**, double*, double*, int, double**, int, std::list<int, std::allocator<int> >*, std::list<int, std::allocator<int> >*, double, double, int, int, double, double, double, int**, int**, double***, int, double*, double*, double*, double, double, int**)':
BayesNetwork.cpp:237: warning: comparison between signed and unsigned integer expressions
BayesNetwork.cpp:241: warning: comparison between signed and unsigned integer expressions
BayesNetwork.cpp: In destructor 'virtual BayesNetwork::˜BayesNetwork()':
BayesNetwork.cpp:250: warning: unused variable 'j'
BayesNetwork.cpp: In member function 'virtual double* BayesNetwork::MCMC(long int, long int, int)':
BayesNetwork.cpp:868: warning: comparison between signed and unsigned integer expressions
BayesNetwork.cpp:963: warning: comparison between signed and unsigned integer expressions
BayesNetwork.cpp:1044: warning: comparison between signed and unsigned integer expressions
BayesNetwork.cpp:1140: warning: comparison between signed and unsigned integer expressions
BayesNetwork.cpp:714: warning: 'mu0' may be used uninitialized in this function
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c BayesNetworkNC.cpp -o BayesNetworkNC.o
BayesNetworkNC.cpp: In member function 'virtual double* BayesNetworkNC::MCMC(long int, long int, int)':
BayesNetworkNC.cpp:465: warning: comparison between signed and unsigned integer expressions
BayesNetworkNC.cpp:560: warning: comparison between signed and unsigned integer expressions
BayesNetworkNC.cpp:640: warning: comparison between signed and unsigned integer expressions
BayesNetworkNC.cpp:735: warning: comparison between signed and unsigned integer expressions
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -DNDEBUG  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks  -c getStates.cpp -o getStates.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o birta.so BayesNetwork.o BayesNetworkNC.o getStates.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/birta.Rcheck/birta/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'birta.Rnw' 
** testing if installed package can be loaded

* DONE (birta)

birta.Rcheck/birta-Ex.timings:

nameusersystemelapsed
birta.run3.0620.0413.115
get_potential_swaps0.0010.0000.002
limmaAnalysis0.1100.0080.122
plotConvergence2.5350.0452.599