Back to the "Multiple platform build/check report" A [B] C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 78/609HostnameOS / ArchBUILDCHECKBUILD BIN
birta 1.2.0
Benedikt Zacher
Snapshot Date: 2013-03-24 16:21:20 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_11/madman/Rpacks/birta
Last Changed Rev: 70050 / Revision: 74773
Last Changed Date: 2012-10-01 15:16:24 -0700 (Mon, 01 Oct 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: birta
Version: 1.2.0
Command: rm -rf birta.buildbin-libdir && mkdir birta.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=birta.buildbin-libdir birta_1.2.0.tar.gz >birta-install.out 2>&1 && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD check --library=birta.buildbin-libdir --install="check:birta-install.out" --force-multiarch --no-vignettes --timings birta_1.2.0.tar.gz && mv birta.buildbin-libdir/* birta.Rcheck/ && rmdir birta.buildbin-libdir
StartedAt: 2013-03-25 00:02:42 -0700 (Mon, 25 Mar 2013)
EndedAt: 2013-03-25 00:04:03 -0700 (Mon, 25 Mar 2013)
EllapsedTime: 80.9 seconds
RetCode: 0
Status:  OK  
CheckDir: birta.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.11-bioc/meat/birta.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'birta/DESCRIPTION' ... OK
* this is package 'birta' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'birta' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'D:/biocbld/bbs-2.11-bioc/meat/birta.buildbin-libdir/birta/libs/i386/birta.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
File 'D:/biocbld/bbs-2.11-bioc/meat/birta.buildbin-libdir/birta/libs/x64/birta.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)

Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.  The detected symbols
are linked into the code but might come from libraries and not actually
be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.11-bioc/meat/birta.Rcheck/00check.log'
for details.

birta.Rcheck/00install.out:


install for i386

* installing *source* package 'birta' ...
** libs
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c BayesNetwork.cpp -o BayesNetwork.o
BayesNetwork.cpp: In constructor 'BayesNetwork::BayesNetwork(int, int, int, char**, char**, char**, int**, double***, double***, int, int, std::list<int>*, std::list<int>*, std::list<int>*, std::list<int>*, double, double, double, double*, double*, double**, double**, double*, double*, int, double**, int, std::list<int>*, std::list<int>*, double, double, int, int, double, double, double, int**, int**, double***, int, double*, double*, double*, double, double, int**)':
BayesNetwork.cpp:237:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:241:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp: In destructor 'virtual BayesNetwork::˜BayesNetwork()':
BayesNetwork.cpp:250:10: warning: unused variable 'j' [-Wunused-variable]
BayesNetwork.cpp: In member function 'virtual double* BayesNetwork::MCMC(long int, long int, int)':
BayesNetwork.cpp:868:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:963:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:1044:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:1140:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:740:92: warning: 'mu0' may be used uninitialized in this function [-Wuninitialized]
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c BayesNetworkNC.cpp -o BayesNetworkNC.o
BayesNetworkNC.cpp: In member function 'virtual double* BayesNetworkNC::MCMC(long int, long int, int)':
BayesNetworkNC.cpp:465:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetworkNC.cpp:560:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetworkNC.cpp:640:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetworkNC.cpp:735:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m32 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c getStates.cpp -o getStates.o
g++ -m32 -shared -s -static-libgcc -o birta.dll tmp.def BayesNetwork.o BayesNetworkNC.o getStates.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.11-bioc/meat/birta.buildbin-libdir/birta/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'birta.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'birta' ...
** libs
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c BayesNetwork.cpp -o BayesNetwork.o
BayesNetwork.cpp: In constructor 'BayesNetwork::BayesNetwork(int, int, int, char**, char**, char**, int**, double***, double***, int, int, std::list<int>*, std::list<int>*, std::list<int>*, std::list<int>*, double, double, double, double*, double*, double**, double**, double*, double*, int, double**, int, std::list<int>*, std::list<int>*, double, double, int, int, double, double, double, int**, int**, double***, int, double*, double*, double*, double, double, int**)':
BayesNetwork.cpp:237:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:241:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp: In destructor 'virtual BayesNetwork::˜BayesNetwork()':
BayesNetwork.cpp:250:10: warning: unused variable 'j' [-Wunused-variable]
BayesNetwork.cpp: In member function 'virtual double* BayesNetwork::MCMC(long int, long int, int)':
BayesNetwork.cpp:868:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:963:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:1044:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:1140:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetwork.cpp:740:92: warning: 'mu0' may be used uninitialized in this function [-Wuninitialized]
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c BayesNetworkNC.cpp -o BayesNetworkNC.o
BayesNetworkNC.cpp: In member function 'virtual double* BayesNetworkNC::MCMC(long int, long int, int)':
BayesNetworkNC.cpp:465:44: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetworkNC.cpp:560:43: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetworkNC.cpp:640:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
BayesNetworkNC.cpp:735:41: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
g++ -m64 -I"D:/biocbld/BBS-2˜1.11-/R/include" -DNDEBUG     -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -mtune=core2 -c getStates.cpp -o getStates.o
g++ -m64 -shared -s -static-libgcc -o birta.dll tmp.def BayesNetwork.o BayesNetworkNC.o getStates.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.11-/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.11-bioc/meat/birta.buildbin-libdir/birta/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'birta' as birta_1.2.0.zip

* DONE (birta)