Package: PWMEnrich

Version: 1.2.0

Command: chmod a+r PWMEnrich -R && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data PWMEnrich

StartedAt: 2013-03-24 23:14:06 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 23:14:21 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 14.5 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

* checking for file 'PWMEnrich/DESCRIPTION' ... OK
* preparing 'PWMEnrich':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: Biostrings
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following object(s) are masked from 'package:stats':

    xtabs

The following object(s) are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, cbind,
    colnames, duplicated, eval, get, intersect, lapply, mapply, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rbind, rep.int,
    rownames, sapply, setdiff, table, tapply, union, unique

Loading required package: IRanges
Loading required package: grid
Warning in data(PWMLogn.dm3.jaspar.insects) :
  data set 'PWMLogn.dm3.jaspar.insects' not found
Warning: 'read.DNAStringSet' is deprecated.
Use 'readDNAStringSet' instead.
See help("Deprecated")

Error: processing vignette 'PWMEnrich.Rnw' failed with diagnostics:
 chunk 1 (label = simple) 
Error in motifEnrichment(sequences, PWMLogn.dm3.jaspar.insects) : 
  object 'PWMLogn.dm3.jaspar.insects' not found
Execution halted