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Package 107/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
iSNetwork 1.8.0 Elizabeth Whalen Last Changed Date: 2007-10-02 17:41:09 -0700 Last Changed Rev: 27709 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | [ WARNINGS ] | |
wellington | Linux (SUSE 9.2) | i686 | ERROR | skipped | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | N O T S U P P O R T E D | |||
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: iSNetwork |
Version: 1.8.0 |
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check iSNetwork_1.8.0.tar.gz |
RetCode: 0 |
Time: 109.5 seconds |
Status: WARNINGS |
CheckDir: iSNetwork.Rcheck |
Warnings: 7 |
* checking for working latex ... OK * using log directory '/home/biocbuild/bbs-2.1-bioc/meat/iSNetwork.Rcheck' * using R version 2.6.0 (2007-10-03) * checking for file 'iSNetwork/DESCRIPTION' ... OK * this is package 'iSNetwork' version '1.8.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'iSNetwork' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... WARNING (R:31199): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... WARNING (R:31202): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed See section 'Generic functions and methods' of the 'Writing R Extensions' manual. * checking replacement functions ... WARNING (R:31231): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed In R, the argument of a replacement function which corresponds to the right hand side must be named 'value'. * checking foreign function calls ... WARNING (R:31286): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed See the chapter 'System and foreign language interfaces' of the 'Writing R Extensions' manual. * checking R code for possible problems ... NOTE (R:31292): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING (R:31330): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed All user-level objects in a package should have documentation entries. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking for code/documentation mismatches ... WARNING (R:31387): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed (R:31466): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed (R:31469): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed * checking Rd \usage sections ... NOTE (R:31475): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * creating iSNetwork-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... WARNING (R:31485): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed --- running texi2dvi on vignettes * creating iSNetwork-manual.tex ... OK * checking iSNetwork-manual.tex ... OK WARNING: There were 7 warnings, see /home/biocbuild/bbs-2.1-bioc/meat/iSNetwork.Rcheck/00check.log for details
iSNetwork.Rcheck/00install.out:
* Installing *source* package 'iSNetwork' ... ** R ** inst ** preparing package for lazy loading Loading required package: graph Loading required package: Rgraphviz Loading required package: RGtk (R:30847): GLib-CRITICAL **: g_hook_insert_sorted: assertion `hook->func != NULL' failed Loading required package: gtkDevice Loading required package: BioMVCClass Loading required package: MVCClass Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: annotate Loading required package: AnnotationDbi Loading required package: DBI Loading required package: RSQLite Loading required package: xtable ** help >>> Building/Updating help pages for package 'iSNetwork' Formats: text html latex example addCBFunction text html latex example addMenuItem text html latex example addNewChildMethod text html latex example addToKeyVals text html latex example clickEvent-methods text html latex createChrLocGSE text html latex example createControlWindow text html latex example createGoGraph text html latex example createGraphPlot text html latex example createHeatmap text html latex example createKEGGGSE text html latex example createModelGraph text html latex example createQQplot text html latex example createSPlot text html latex example createSpreadsheet text html latex example createSubset text html latex example deleteMVC text html latex example getActiveMVC text html latex example getColor text html latex example getData text html latex example getHiddenValues text html latex example getKeyVals text html latex example getMVCFromWinNum text html latex example getMVCList text html latex example getMethodsToCreateChild text html latex example getModelNames text html latex example getModelVar text html latex example getNodeAttr text html latex example getTooltips text html latex example handleMessage-methods text html latex heatmapNI text html latex example identifyView-methods text html latex initialize-methods text html latex loadData text html latex example loadModel text html latex example loadModelVar text html latex example motionEvent-methods text html latex performMDS text html latex example plotModelGraph text html latex example provideInfo-methods text html latex quitiSNetwork text html latex example removeKeyVals text html latex example resetWinSize text html latex example setActiveMVC text html latex example setCallFunc text html latex example setChipType text html latex example setColor text html latex example setModelName text html latex example setToggleX text html latex example setTooltips text html latex example showHiddenValues text html latex example updateModel-methods text html latex updateView-methods text html latex ** building package indices ... * DONE (iSNetwork)