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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 192/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
reb1.11.1Karl J. DykemaLast Changed Date: 2007-05-02 10:47:55 -0700 Last Changed Rev: 24449 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ WARNINGS ] | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
Package: reb |
Version: 1.11.1 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check reb_1.11.1.tar.gz |
RetCode: 0 |
Time: 102.5 seconds |
Status: WARNINGS |
CheckDir: reb.Rcheck |
Warnings: 1 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/reb.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'reb/DESCRIPTION' ... OK * this is package 'reb' version '1.11.1' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'reb' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... WARNING t: function(x) t.binom.test: function(x, trim) See section 'Generic functions and methods' of the 'Writing R Extensions' manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating reb-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating reb-manual.tex ... OK * checking reb-manual.tex ... OK WARNING: There was 1 warning, see E:/biocbld/bbs-2.1-bioc/meat/reb.Rcheck/00check.log for details
reb.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/reb.Rcheck ---------- Making package reb ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata making DLL ... making movbin.d from movbin.c gcc -Ie:/biocbld/bbs-2.1-bioc/R/include -Wall -O3 -std=gnu99 -c movbin.c -o movbin.o movbin.c: In function `bcount': movbin.c:37: warning: suggest parentheses around comparison in operand of & movbin.c: In function `bscore': movbin.c:48: warning: implicit declaration of function `sqrt' movbin.c: In function `mean': movbin.c:63: warning: suggest parentheses around comparison in operand of & movbin.c: In function `mspan_mov_binom_mx': movbin.c:128: warning: unused variable `im_mx' movbin.c: In function `mspan_mov_binom': movbin.c:145: warning: unused variable `r' movbin.c:145: warning: unused variable `c' movbin.c: In function `main': movbin.c:158: warning: unused variable `data' movbin.c:160: warning: unused variable `gx2' movbin.c:161: warning: unused variable `im_vec' movbin.c:161: warning: unused variable `im_mx' movbin.c:162: warning: unused variable `sum_vec' movbin.c:162: warning: unused variable `sum_mx' movbin.c:163: warning: unused variable `range' movbin.c:166: warning: unused variable `rlen' movbin.c:168: warning: unused variable `nr' windres -I e:/biocbld/bbs-2.1-bioc/R/include -i reb_res.rc -o reb_res.o gcc -shared -s -o reb.dll reb.def movbin.o reb_res.o -Le:/biocbld/bbs-2.1-bioc/R/bin -lR ... DLL made installing DLL installing R files installing inst files installing data files installing man source files installing indices not zipping data installing help Note: unmatched right brace in 'regmap' on or after line 15 Note: unmatched right brace in 'regmap.Rd' on or after line 15 >>> Building/Updating help pages for package 'reb' Formats: text html latex example chm Hs.arms text html latex chm absMax text html latex example chm buildChromCytoband text html latex example chm buildChromMap text html latex example chm cset2band text html latex example chm fromRevIsh text html latex example chm isAbnormal text html latex example chm mcr.eset text html latex example chm movbin text html latex example chm movt text html latex example chm naMean text html latex example chm regmap text html latex example chm revish text html latex example chm rmAmbigMappings text html latex example chm smoothByRegion text html latex example chm summarizeByRegion text html latex example chm t.binom.test text html latex example chm writeGFF3 text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\reb.Rcheck\00_pkg_src\reb\chm\reb.chm Compile time: 0 minutes, 0 seconds 19 Topics 51 Local links 0 Internet links 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\reb.Rcheck\00_pkg_src\reb\chm\reb.chm, 39,578 bytes Compression decreased file by 22,895 bytes. adding MD5 sums * DONE (reb)