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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 192/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
reb1.11.1Karl J. DykemaLast Changed Date: 2007-05-02 10:47:55 -0700 Last Changed Rev: 24449 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | [ WARNINGS ] | |
wellington | Linux (SUSE 9.2) | i686 | OK | WARNINGS | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | WARNINGS | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
Package: reb |
Version: 1.11.1 |
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check reb_1.11.1.tar.gz |
RetCode: 0 |
Time: 96.0 seconds |
Status: WARNINGS |
CheckDir: reb.Rcheck |
Warnings: 1 |
* checking for working latex ... OK * using log directory '/home/biocbuild/bbs-2.1-bioc/meat/reb.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'reb/DESCRIPTION' ... OK * this is package 'reb' version '1.11.1' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'reb' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... WARNING t: function(x) t.binom.test: function(x, trim) See section 'Generic functions and methods' of the 'Writing R Extensions' manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating reb-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating reb-manual.tex ... OK * checking reb-manual.tex ... OK WARNING: There was 1 warning, see /home/biocbuild/bbs-2.1-bioc/meat/reb.Rcheck/00check.log for details
reb.Rcheck/00install.out:
* Installing *source* package 'reb' ... ** libs gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c movbin.c -o movbin.o movbin.c: In function 'bcount': movbin.c:37: warning: suggest parentheses around comparison in operand of & movbin.c: In function 'bscore': movbin.c:48: warning: implicit declaration of function 'sqrt' movbin.c:48: warning: incompatible implicit declaration of built-in function 'sqrt' movbin.c: In function 'mean': movbin.c:63: warning: suggest parentheses around comparison in operand of & movbin.c: In function 'mspan_mov_binom_mx': movbin.c:128: warning: unused variable 'im_mx' movbin.c: In function 'mspan_mov_binom': movbin.c:145: warning: unused variable 'c' movbin.c:145: warning: unused variable 'r' movbin.c: In function 'main': movbin.c:168: warning: unused variable 'nr' movbin.c:166: warning: unused variable 'rlen' movbin.c:163: warning: unused variable 'range' movbin.c:162: warning: unused variable 'sum_mx' movbin.c:162: warning: unused variable 'sum_vec' movbin.c:161: warning: unused variable 'im_mx' movbin.c:161: warning: unused variable 'im_vec' movbin.c:160: warning: unused variable 'gx2' movbin.c:158: warning: unused variable 'data' gcc -std=gnu99 -shared -L/usr/local/lib64 -o reb.so movbin.o -L/home/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** inst ** help Note: unmatched right brace in 'regmap' on or after line 15 >>> Building/Updating help pages for package 'reb' Formats: text html latex example Hs.arms text html latex absMax text html latex example buildChromCytoband text html latex example buildChromMap text html latex example cset2band text html latex example fromRevIsh text html latex example isAbnormal text html latex example mcr.eset text html latex example movbin text html latex example movt text html latex example naMean text html latex example regmap text html latex example revish text html latex example rmAmbigMappings text html latex example smoothByRegion text html latex example summarizeByRegion text html latex example t.binom.test text html latex example writeGFF3 text html latex example ** building package indices ... * DONE (reb)