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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 95/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
gff3Plotter1.9.0Oleg SklyarLast Changed Date: 2007-05-11 21:56:41 -0700 Last Changed Rev: 24616 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ WARNINGS ] | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | WARNINGS | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | WARNINGS | OK |
Package: gff3Plotter |
Version: 1.9.0 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check gff3Plotter_1.9.0.tar.gz |
RetCode: 0 |
Time: 60.6 seconds |
Status: WARNINGS |
CheckDir: gff3Plotter.Rcheck |
Warnings: 1 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/gff3Plotter.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'gff3Plotter/DESCRIPTION' ... OK * this is package 'gff3Plotter' version '1.9.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'gff3Plotter' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... WARNING 'library' or 'require' calls not declared from: GDD See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE plot.gff.toFile: no visible global function definition for 'GDD' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'plot.gff': plot.gff S3 methods shown with full name in documentation object 'plot.gff.toFile': plot.gff.toFile The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * creating gff3Plotter-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating gff3Plotter-manual.tex ... OK * checking gff3Plotter-manual.tex ... OK WARNING: There was 1 warning, see /extra/loc/biocbuild/bbs-2.1-bioc/meat/gff3Plotter.Rcheck/00check.log for details
gff3Plotter.Rcheck/00install.out:
* Installing *source* package 'gff3Plotter' ... ** R ** inst ** preparing package for lazy loading ** help Note: unmatched right brace in 'getTickCoords' on or after line 19 Note: unmatched right brace in 'plot.gff' on or after line 34 Note: unmatched right brace in 'plot.gff.toFile' on or after line 25 >>> Building/Updating help pages for package 'gff3Plotter' Formats: text html latex example getAttr text html latex example getTickCoords text html latex example internals text html latex plot.gff text html latex example plot.gff.toFile text html latex example read.gff text html latex example ** building package indices ... * DONE (gff3Plotter)