Package: gff3Plotter

Version: 1.9.0

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check gff3Plotter_1.9.0.tar.gz

RetCode: 0

Time: 37.9 seconds

Status: WARNINGS

CheckDir: gff3Plotter.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.1-bioc/meat/gff3Plotter.Rcheck'
* using R version 2.6.0 Under development (unstable) (2007-08-06 r42439)
* checking for file 'gff3Plotter/DESCRIPTION' ... OK
* this is package 'gff3Plotter' version '1.9.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gff3Plotter' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
  GDD
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
plot.gff.toFile: no visible global function definition for 'GDD'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.gff':
  plot.gff

S3 methods shown with full name in documentation object 'plot.gff.toFile':
  plot.gff.toFile

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* creating gff3Plotter-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating gff3Plotter-manual.tex ... OK
* checking gff3Plotter-manual.tex ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.1-bioc/meat/gff3Plotter.Rcheck/00check.log
for details

installing R.css in E:/biocbld/bbs-2.1-bioc/meat/gff3Plotter.Rcheck


---------- Making package gff3Plotter ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  preparing package gff3Plotter for lazy loading
  installing man source files
  installing indices
  installing help
Note: unmatched right brace in 'getTickCoords' on or after line 19
Note: unmatched right brace in 'getTickCoords.Rd' on or after line 19
Note: unmatched right brace in 'plot.gff' on or after line 34
Note: unmatched right brace in 'plot.gff.Rd' on or after line 34
Note: unmatched right brace in 'plot.gff.toFile' on or after line 25
Note: unmatched right brace in 'plot.gff.toFile.Rd' on or after line 25
 >>> Building/Updating help pages for package 'gff3Plotter'
     Formats: text html latex example chm 
  getAttr                           text    html    latex   example chm
  getTickCoords                     text    html    latex   example chm
  internals                         text    html    latex           chm
  plot.gff                          text    html    latex   example chm
  plot.gff.toFile                   text    html    latex   example chm
  read.gff                          text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.1-bioc\meat\gff3Plotter.Rcheck\00_pkg_src\gff3Plotter\chm\gff3Plotter.chm


Compile time: 0 minutes, 0 seconds
7	Topics
27	Local links
1	Internet link
1	Graphic


Created e:\biocbld\bbs-2.1-bioc\meat\gff3Plotter.Rcheck\00_pkg_src\gff3Plotter\chm\gff3Plotter.chm, 24,608 bytes
Compression decreased file by 1,424 bytes.
  adding MD5 sums

* DONE (gff3Plotter)