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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 113/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
Icens1.9.0Biocore Team c/o BioC user listLast Changed Date: 2007-08-20 09:33:20 -0700 Last Changed Rev: 26527 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ OK ] | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: Icens |
Version: 1.9.0 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check Icens_1.9.0.tar.gz |
RetCode: 0 |
Time: 138.8 seconds |
Status: OK |
CheckDir: Icens.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/Icens.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'Icens/DESCRIPTION' ... OK * this is package 'Icens' version '1.9.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'Icens' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE VEMICMmac: no visible binding for global variable 'EMstep' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'plot.icsurv': plot.icsurv The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking data for non-ASCII characters ... OK * creating Icens-Ex.R ... OK * checking examples ... OK * checking tests ... make[1]: Entering directory `/extra/loc/biocbuild/bbs-2.1-bioc/meat/Icens.Rcheck/tests' Running 'testbv.R' Comparing 'testbv.Rout' to 'testbv.Rout.save' ...117c117 < [6] 1.461001e+00 1.207129e+00 1.000000e+00 4.748624e-01 -7.794843e-17 --- > [6] 1.461001e+00 1.207129e+00 1.000000e+00 4.748624e-01 -2.480201e-16 OK make[1]: Leaving directory `/extra/loc/biocbuild/bbs-2.1-bioc/meat/Icens.Rcheck/tests' OK * creating Icens-manual.tex ... OK * checking Icens-manual.tex ... OK
Icens.Rcheck/00install.out:
* Installing *source* package 'Icens' ... ** R ** data ** preparing package for lazy loading Loading required package: survival Loading required package: splines ** help >>> Building/Updating help pages for package 'Icens' Formats: text html latex example BVcliques text html latex example BVclmat text html latex example BVsupport text html latex example Bisect text html latex EM text html latex example EMICM text html latex example ISDM text html latex example Icens-internal text html latex MLEintvl text html latex example Maclist text html latex example Macmat text html latex example PGM text html latex example PMGA text html latex Plotboxes text html latex example VEM text html latex example cmv text html latex example cosmesis text html latex example hiv text html latex example icsurv text html latex plot.icsurv text html latex example pruitt text html latex example ** building package indices ... * DONE (Icens)