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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 113/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
Icens1.9.0Biocore Team c/o BioC user listLast Changed Date: 2007-08-20 09:33:20 -0700 Last Changed Rev: 26527 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | [ OK ] | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: Icens |
Version: 1.9.0 |
Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD check Icens_1.9.0.tar.gz |
RetCode: 0 |
Time: 57.4 seconds |
Status: OK |
CheckDir: Icens.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'E:/biocbld/bbs-2.1-bioc/meat/Icens.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'Icens/DESCRIPTION' ... OK * this is package 'Icens' version '1.9.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'Icens' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE VEMICMmac: no visible binding for global variable 'EMstep' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'plot.icsurv': plot.icsurv The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking data for non-ASCII characters ... OK * creating Icens-Ex.R ... OK * checking examples ... OK * checking tests ... make[1]: Entering directory `/cygdrive/e/biocbld/bbs-2.1-bioc/meat/Icens.Rcheck/tests' Running 'testbv.R' Comparing 'testbv.Rout' to 'testbv.Rout.save' ...117c117 < [6] 1.461001e+00 1.207129e+00 1.000000e+00 4.748624e-01 4.639536e-17 --- > [6] 1.461001e+00 1.207129e+00 1.000000e+00 4.748624e-01 -2.480201e-16 OK make[1]: Leaving directory `/cygdrive/e/biocbld/bbs-2.1-bioc/meat/Icens.Rcheck/tests' OK * creating Icens-manual.tex ... OK * checking Icens-manual.tex ... OK
Icens.Rcheck/00install.out:
installing R.css in E:/biocbld/bbs-2.1-bioc/meat/Icens.Rcheck ---------- Making package Icens ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata installing R files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'Icens' Formats: text html latex example chm BVcliques text html latex example chm BVclmat text html latex example chm BVsupport text html latex example chm Bisect text html latex chm EM text html latex example chm EMICM text html latex example chm ISDM text html latex example chm Icens-internal text html latex chm MLEintvl text html latex example chm Maclist text html latex example chm Macmat text html latex example chm PGM text html latex example chm PMGA text html latex chm Plotboxes text html latex example chm VEM text html latex example chm cmv text html latex example chm cosmesis text html latex example chm hiv text html latex example chm icsurv text html latex chm plot.icsurv text html latex example chm pruitt text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling e:\biocbld\bbs-2.1-bioc\meat\Icens.Rcheck\00_pkg_src\Icens\chm\Icens.chm Compile time: 0 minutes, 0 seconds 22 Topics 94 Local links 0 Internet links 1 Graphic Created e:\biocbld\bbs-2.1-bioc\meat\Icens.Rcheck\00_pkg_src\Icens\chm\Icens.chm, 39,592 bytes Compression decreased file by 28,577 bytes. preparing package Icens for lazy loading Loading required package: survival Loading required package: splines adding MD5 sums * DONE (Icens)