Back to the "Multiple platform build/check report"
IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 97/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
GLAD1.11.0Philippe HupeLast Changed Date: 2007-06-19 10:08:17 -0700 Last Changed Rev: 25475 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | [ OK ] | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
pitt | Mac OS X (10.4.10) | i386 | OK | OK | OK |
Package: GLAD |
Version: 1.11.0 |
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD check GLAD_1.11.0.tar.gz |
RetCode: 0 |
Time: 49.5 seconds |
Status: OK |
CheckDir: GLAD.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/home/biocbuild/bbs-2.1-bioc/meat/GLAD.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-08-06 r42439) * checking for file 'GLAD/DESCRIPTION' ... OK * this is package 'GLAD' version '1.11.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'GLAD' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE plotProfile.profileCGH: no visible binding for global variable 'cytoband' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'arrayPersp': arrayPersp.default arrayPersp.arrayCGH S3 methods shown with full name in documentation object 'arrayPlot': arrayPlot.default arrayPlot.arrayCGH S3 methods shown with full name in documentation object 'as.data.frame.profileCGH': as.data.frame.profileCGH S3 methods shown with full name in documentation object 'as.profileCGH': as.profileCGH.data.frame S3 methods shown with full name in documentation object 'daglad': daglad.profileCGH S3 methods shown with full name in documentation object 'glad': glad.profileCGH S3 methods shown with full name in documentation object 'plotProfile': plotProfile.profileCGH The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating GLAD-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating GLAD-manual.tex ... OK * checking GLAD-manual.tex ... OK
GLAD.Rcheck/00install.out:
* Installing *source* package 'GLAD' ... Configuring variable environment ** libs gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c distance.c -o distance.o g++ -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c glad.cpp -o glad.o glad.cpp: In function 'void detectOutliers(double*, int*, int*, int*, int*, int*, double*, int*)': glad.cpp:112: warning: comparison between signed and unsigned integer expressions gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c glad-function.c -o glad-function.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c hclust.c -o hclust.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c laws.c -o laws.o g++ -shared -L/usr/local/lib64 -o GLAD.so distance.o glad.o glad-function.o hclust.o laws.o -L/home/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** demo ** inst ** preparing package for lazy loading Loading required package: aws Loading required package: tcltk Loading Tcl/Tk interface ... done ** help >>> Building/Updating help pages for package 'GLAD' Formats: text html latex example ChrNumeric text html latex example ColorBar text html latex example GLAD-internal text html latex arrayCGH text html latex example arrayPersp text html latex example arrayPlot text html latex example as.data.frame.profileCGH text html latex example as.profileCGH text html latex example bladder text html latex example cytoband text html latex example daglad text html latex example glad text html latex example hclust text html latex example kernel text html latex myPalette text html latex example plotProfile text html latex example profileCGH text html latex example snijders text html latex example tkdaglad text html latex example veltman text html latex example ** building package indices ... * DONE (GLAD)