Package: ACME

Version: 1.3.2

Command: E:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build ACME

RetCode: 1

Time: 26.6 seconds

Status: ERROR

PackageFile: None

* checking for file 'ACME/DESCRIPTION' ... OK
* preparing 'ACME':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.1-bioc/tmpdir/Rinst604084283


---------- Making package ACME ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making windowChisq.d from windowChisq.c
gcc   -Ie:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c windowChisq.c -o windowChisq.o
windowChisq.c: In function `windowChisq':
windowChisq.c:58: warning: suggest parentheses around comparison in operand of &
windowChisq.c:63: warning: suggest parentheses around comparison in operand of &
windowChisq.c:21: warning: unused variable `xa'
windowChisq.c: At top level:
windowChisq.c:86: warning: initialization from incompatible pointer type
windres -I e:/biocbld/bbs-2.1-bioc/R/include  -i ACME_res.rc -o ACME_res.o
gcc  -shared -s  -o ACME.dll ACME.def windowChisq.o ACME_res.o  -Le:/biocbld/bbs-2.1-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'ACME'
     Formats: text html latex example chm 
  aGFF-class                        text    html    latex   example chm
  aGFFCalc-class                    text    html    latex   example chm
  do.aGFF.calc                      text    html    latex   example chm
  example.agff                      text    html    latex   example chm
  findClosestGene                   text    html    latex   example chm
  findRegions                       text    html    latex   example chm
  getRefflat                        text    html    latex   example chm
  read.resultsGFF                   text    html    latex   example chm
  write.sgr                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702



Compiling e:\biocbld\bbs-2.1-bioc\meat\ACME\chm\ACME.chm





Compile time: 0 minutes, 0 seconds

10	Topics

33	Local links

0	Internet links

1	Graphic





Created e:\biocbld\bbs-2.1-bioc\meat\ACME\chm\ACME.chm, 26,457 bytes

Compression decreased file by 4,366 bytes.

  adding MD5 sums

* DONE (ACME)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "print" in "ACME"
Creating a new generic function for "plot" in "ACME"

Error: processing vignette 'ACME.Rnw' failed with diagnostics:
 chunk 3 
Error in function (classes, fdef, mtable)  : 
  unable to find an inherited method for function "Chromosome", for signature "aGFF"
Execution halted