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IMPORTANT NOTE: R was configured with --enable-strict-barrier on lamb1 |
Package 3/247 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
ACME1.3.2Sean DavisLast Changed Date: 2007-08-09 13:06:04 -0700 Last Changed Rev: 26266 | lamb1 | Linux (SUSE 10.1) | x86_64 | [ ERROR ] | skipped | |
wellington | Linux (SUSE 9.2) | i686 | ERROR | skipped | ||
liverpool | Windows Server 2003 R2 (32-bit) | x64 | ERROR | skipped | skipped | |
pitt | Mac OS X (10.4.10) | i386 | ERROR | skipped | skipped |
Package: ACME |
Version: 1.3.2 |
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD build ACME |
RetCode: 1 |
Time: 5.5 seconds |
Status: ERROR |
PackageFile: None |
* checking for file 'ACME/DESCRIPTION' ... OK * preparing 'ACME': * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to re-build vignettes * Installing *source* package 'ACME' ... ** libs gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c windowChisq.c -o windowChisq.o windowChisq.c: In function 'windowChisq': windowChisq.c:58: warning: suggest parentheses around comparison in operand of & windowChisq.c:63: warning: suggest parentheses around comparison in operand of & windowChisq.c:21: warning: unused variable 'xa' windowChisq.c: At top level: windowChisq.c:86: warning: initialization from incompatible pointer type gcc -std=gnu99 -shared -L/usr/local/lib64 -o ACME.so windowChisq.o -L/home/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** inst ** help >>> Building/Updating help pages for package 'ACME' Formats: text html latex example aGFF-class text html latex example aGFFCalc-class text html latex example do.aGFF.calc text html latex example example.agff text html latex example findClosestGene text html latex example findRegions text html latex example getRefflat text html latex example read.resultsGFF text html latex example write.sgr text html latex example ** building package indices ... * DONE (ACME) * creating vignettes ... ERROR Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Creating a new generic function for "print" in "ACME" Creating a new generic function for "plot" in "ACME" Error: processing vignette 'ACME.Rnw' failed with diagnostics: chunk 3 Error in function (classes, fdef, mtable) : unable to find an inherited method for function "Chromosome", for signature "aGFF" Execution halted