Package: fbat

Version: 1.1.2

Command: D:\biocbld\bbs-2.1-bioc\R\bin\R.exe CMD build fbat

RetCode: 1

Time: 6.5 seconds

Status: ERROR

PackageFile: None

* checking for file 'fbat/DESCRIPTION' ... OK
* preparing 'fbat':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst60003067
WARNING: true value of 'SaveImage' is deprecated in favour of 'LazyLoad: true'


---------- Making package fbat ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making FBAT.d from FBAT.c
making register.d from register.c
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c FBAT.c -o FBAT.o
FBAT.c: In function `countLines':
FBAT.c:2142: warning: 'tmpnc2' might be used uninitialized in this function
FBAT.c: In function `checkoneNuclearFamily':
FBAT.c:1667: warning: 'sex1' might be used uninitialized in this function
FBAT.c:1667: warning: 'sex2' might be used uninitialized in this function
FBAT.c: In function `checkdecomposePed':
FBAT.c:1590: warning: 'i' might be used uninitialized in this function
FBAT.c: In function `checkCompatible':
FBAT.c:1404: warning: 'start2' might be used uninitialized in this function
FBAT.c: In function `oneNuclearFamily':
FBAT.c:1859: warning: 'sex1' might be used uninitialized in this function
FBAT.c:1859: warning: 'sex2' might be used uninitialized in this function
FBAT.c: In function `decomposePed':
FBAT.c:1986: warning: 'i' might be used uninitialized in this function
FBAT.c: In function `fbat':
FBAT.c:43: warning: 'start2' might be used uninitialized in this function
gcc   -Id:/biocbld/bbs-2.1-bioc/R/include  -Wall -O3 -std=gnu99   -c register.c -o register.o
g77 -O3 -Wall   -c missGFreq.f -o missGFreq.o
windres -I d:/biocbld/bbs-2.1-bioc/R/include  -i fbat_res.rc -o fbat_res.o
gcc  -shared -s  -o fbat.dll fbat.def FBAT.o register.o missGFreq.o fbat_res.o  -Ld:/biocbld/bbs-2.1-bioc/R/bin   -lg2c -lR
  ... DLL made
  installing DLL
  installing R files
  save image
Loading required package: MASS
Loading required package: GeneticsBase
Error: package 'GeneticsBase' could not be loaded
In addition: Warning message:
In library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) :
  there is no package called 'GeneticsBase'
Execution halted
execution of package source for 'fbat' failed
make[2]: *** [D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst60003067/fbat/R/fbat] Error 1
make[1]: *** [all] Error 2
make: *** [pkg-fbat] Error 2
*** Installation of fbat failed ***

Removing 'D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst60003067/fbat'
 ERROR
Installation failed.
Removing 'D:/biocbld/bbs-2.1-bioc/tmpdir/Rinst60003067'