Package: fbat

Version: 1.1.2

Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build fbat

RetCode: 1

Time: 10.1 seconds

Status: ERROR

PackageFile: None

* checking for file 'fbat/DESCRIPTION' ... OK
* preparing 'fbat':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'fbat' ...
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fPIC  -g -O2 -Wall -c FBAT.c -o FBAT.o
FBAT.c: In function 'countWords':
FBAT.c:2125: warning: array subscript has type 'char'
FBAT.c:2125: warning: array subscript has type 'char'
FBAT.c:2131: warning: array subscript has type 'char'
FBAT.c: In function 'countLines':
FBAT.c:2142: warning: 'tmpnc2' may be used uninitialized in this function
FBAT.c: In function 'oneNuclearFamily':
FBAT.c:1859: warning: 'sex2' may be used uninitialized in this function
FBAT.c:1859: warning: 'sex1' may be used uninitialized in this function
FBAT.c: In function 'decomposePed':
FBAT.c:1986: warning: 'i' may be used uninitialized in this function
FBAT.c: In function 'checkoneNuclearFamily':
FBAT.c:1667: warning: 'sex2' may be used uninitialized in this function
FBAT.c:1667: warning: 'sex1' may be used uninitialized in this function
FBAT.c: In function 'checkdecomposePed':
FBAT.c:1590: warning: 'i' may be used uninitialized in this function
FBAT.c: In function 'checkCompatible':
FBAT.c:1404: warning: 'start2' may be used uninitialized in this function
FBAT.c: In function 'fbat':
FBAT.c:43: warning: 'start2' may be used uninitialized in this function
gfortran   -fPIC  -g -O2 -Wall -c missGFreq.f -o missGFreq.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fPIC  -g -O2 -Wall -c register.c -o register.o
gcc -std=gnu99 -G -L/usr/local/lib -o fbat.so FBAT.o missGFreq.o register.o  -lgfortran -lm -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** data
** inst
WARNING: true value of 'SaveImage' is deprecated in favour of 'LazyLoad: true'
** save image
Loading required package: MASS
Loading required package: GeneticsBase
Error: package 'GeneticsBase' could not be loaded
In addition: Warning message:
In library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) :
  there is no package called 'GeneticsBase'
Execution halted
ERROR: execution of package source for 'fbat' failed
** Removing '/tmp/Rinst1583471674/fbat'
 ERROR
Installation failed.
Removing '/tmp/Rinst1583471674'