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NOTES: (1) a maintainance reboot of lemming prevented these builds to complete on this machine (2) these are the last builds with R 2.6.0 (2007-06-03 r41797) on lamb1 and lemming, next builds will be with R 2.6.0 (2007-06-10 r41908) configured with --enable-strict-barrier |
Package 60/238 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
DNAcopy1.11.0E. S. VenkatramanLast Changed Date: 2007-04-24 11:31:42 -0700 Last Changed Rev: 24217 | lamb1 | Linux (SUSE 10.1) | x86_64 | [ OK ] | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | OK | OK | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | OK | skipped |
Package: DNAcopy |
Version: 1.11.0 |
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD build DNAcopy |
RetCode: 0 |
Time: 5.5 seconds |
Status: OK |
PackageFile: DNAcopy_1.11.0.tar.gz |
* checking for file 'DNAcopy/DESCRIPTION' ... OK * preparing 'DNAcopy': * checking DESCRIPTION meta-information ... OK * cleaning src * checking whether 'INDEX' is up-to-date ... NO * use '--force' to overwrite the existing 'INDEX' * installing the package to re-build vignettes * Installing *source* package 'DNAcopy' ... ** libs gfortran -fpic -g -O2 -Wall -c changepoints.f -o changepoints.o changepoints.f: In function 'tmax1': changepoints.f:175: warning: 'wtmxj' may be used uninitialized in this function changepoints.f:175: warning: 'wtmxi' may be used uninitialized in this function changepoints.f:175: warning: 'sxmxi' may be used uninitialized in this function gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c flchoose.c -o flchoose.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c fphyper.c -o fphyper.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c fpnorm.c -o fpnorm.o gfortran -fpic -g -O2 -Wall -c getbdry.f -o getbdry.o getbdry.f: In function 'getbdry': getbdry.f:1: warning: unused variable 'i' getbdry.f:1: warning: unused variable 'k' gfortran -fpic -g -O2 -Wall -c hybcpt.f -o hybcpt.o gfortran -fpic -g -O2 -Wall -c prune.f -o prune.o prune.f: In function 'combn': prune.f:100: warning: unused variable 'n' gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c rshared.c -o rshared.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o DNAcopy.so changepoints.o flchoose.o fphyper.o fpnorm.o getbdry.o hybcpt.o prune.o rshared.o -lgfortran -lm -L/home/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** data ** moving datasets to lazyload DB ** demo ** inst ** help Note: unmatched right brace in 'segment' on or after line 60 >>> Building/Updating help pages for package 'DNAcopy' Formats: text html latex example CNA text html latex example DNAcopy-internal text html latex DNAcopy text html latex coriell text html latex cytoBand text html latex getbdry text html latex plot.DNAcopy text html latex example segment text html latex example smooth.CNA text html latex example subset.CNA text html latex example subset.DNAcopy text html latex ** building package indices ... * DONE (DNAcopy) * creating vignettes ... OK * cleaning src * removing junk files * checking for LF line-endings in source files * checking for empty or unneeded directories * building 'DNAcopy_1.11.0.tar.gz'