Package: DNAcopy

Version: 1.11.0

Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD build DNAcopy

RetCode: 0

Time: 28.9 seconds

Status: OK

PackageFile: DNAcopy_1.11.0.tar.gz

* checking for file 'DNAcopy/DESCRIPTION' ... OK
* preparing 'DNAcopy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'DNAcopy' ...
** libs
gfortran   -fPIC  -g -O2 -Wall -c changepoints.f -o changepoints.o
changepoints.f: In function 'tmax1':
changepoints.f:175: warning: 'wtmxj' may be used uninitialized in this function
changepoints.f:175: warning: 'wtmxi' may be used uninitialized in this function
changepoints.f:175: warning: 'sxmxi' may be used uninitialized in this function
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fPIC  -g -O2 -Wall -c flchoose.c -o flchoose.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fphyper.c -o fphyper.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fPIC  -g -O2 -Wall -c fpnorm.c -o fpnorm.o
gfortran   -fPIC  -g -O2 -Wall -c getbdry.f -o getbdry.o
getbdry.f: In function 'getbdry':
getbdry.f:1: warning: unused variable 'i'
getbdry.f:1: warning: unused variable 'k'
gfortran   -fPIC  -g -O2 -Wall -c hybcpt.f -o hybcpt.o
gfortran   -fPIC  -g -O2 -Wall -c prune.f -o prune.o
prune.f: In function 'combn':
prune.f:100: warning: unused variable 'n'
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include  -I/usr/local/include    -fPIC  -g -O2 -Wall -c rshared.c -o rshared.o
gcc -std=gnu99 -G -L/usr/local/lib -o DNAcopy.so changepoints.o flchoose.o fphyper.o fpnorm.o getbdry.o hybcpt.o prune.o rshared.o  -lgfortran -lm -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR
** R
** data
**  moving datasets to lazyload DB
** demo
** inst
** help
Note: unmatched right brace in 'segment' on or after line 60
 >>> Building/Updating help pages for package 'DNAcopy'
     Formats: text html latex example 
  CNA                               text    html    latex   example
  DNAcopy-internal                  text    html    latex
  DNAcopy                           text    html    latex
  coriell                           text    html    latex
  cytoBand                          text    html    latex
  getbdry                           text    html    latex
  plot.DNAcopy                      text    html    latex   example
  segment                           text    html    latex   example
  smooth.CNA                        text    html    latex   example
  subset.CNA                        text    html    latex   example
  subset.DNAcopy                    text    html    latex
** building package indices ...
* DONE (DNAcopy)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'DNAcopy_1.11.0.tar.gz'