Back to the "Multiple platform build/check report"
Package 29/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
bgx1.1.4Ernest TurroLast Changed Date: 2007-05-20 16:46:53 -0700 Last Changed Rev: 24863 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ OK ] | ||
churchill | Solaris 2.9 | sparc | N O T S U P P O R T E D | |||
lemming | Windows Server 2003 (32-bit) | x64 | OK | TIMEOUT | OK |
Package: bgx |
Version: 1.1.4 |
Command: /loc/biocbuild/bbs-2.1-bioc/R/bin/R CMD check bgx_1.1.4.tar.gz |
RetCode: 0 |
Time: 420.5 seconds |
Status: OK |
CheckDir: bgx.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.1-bioc/meat/bgx.Rcheck' * using R version 2.6.0 Under development (unstable) (2007-04-17 r41210) * checking for file 'bgx/DESCRIPTION' ... OK * this is package 'bgx' version '1.1.4' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'bgx' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $BLAS_LIBS ... OK * creating bgx-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating bgx-manual.tex ... OK * checking bgx-manual.tex ... OK
bgx.Rcheck/00install.out:
* Installing *source* package 'bgx' ... checking for gcc... gcc -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking for C compiler vendor... gnu checking whether C compiler accepts -ffast-math... yes checking whether C compiler accepts -O3... yes checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for gcc architecture flag... checking for x86 cpuid 0 output... 5:756e6547:6c65746e:49656e69 checking for x86 cpuid 1 output... f41:1020800:641d:bfebfbff checking whether C compiler accepts -march=prescott... yes checking for gcc architecture flag... -march=prescott checking for gcc -std=gnu99 option to accept ISO C99... none needed checking for main in -lm... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking build system type... (cached) i686-pc-linux-gnu checking for boostlib >= 1.31.0... yes checking whether the Boost::Filesystem library is available... yes checking for main in -lboost_filesystem... yes checking whether the Boost::Program_Options library is available... no checking whether the Boost::Thread library is available... yes checking for main in -lboost_thread... yes checking whether the Boost::IOStreams library is available... no checking whether the Boost::Serialization library is available... no checking whether the Boost::Signals library is available... yes checking for main in -lboost_signals... yes checking whether the Boost::Date_Time library is available... yes checking for main in -lboost_date_time... yes checking whether the Boost::Regex library is available... yes checking for main in -lboost_regex... yes checking whether the Boost::UnitTestFramework library is available... no checking for an ANSI C-conforming const... yes checking for inline... inline configure: creating ./config.status config.status: creating src/Makevars ** libs g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -ffast-math -O3 -DUSING_R -c bgx.cc -o bgx.o g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -ffast-math -O3 -DUSING_R -c bgx_frontend.cc -o bgx_frontend.o gcc -std=gnu99 -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -g -O2 -march=prescott -ffast-math -O3 -c qnorm.c -o qnorm.o g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -ffast-math -O3 -DUSING_R -c rundir.cc -o rundir.o g++ -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/loc/biocbuild/bbs-2.1-bioc/R/include -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -ffast-math -O3 -DUSING_R -c sokal.cc -o sokal.o g++ -shared -L/usr/local/lib -o bgx.so bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -lm -L/loc/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** inst ** preparing package for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affy Loading required package: affyio Loading required package: gcrma Loading required package: matchprobes Loading required package: splines ** help >>> Building/Updating help pages for package 'bgx' Formats: text html latex example analysis.bgx text html latex example bgx text html latex example mcmc.bgx text html latex example readOutput.bgx text html latex example saveAffinityPlot.bgx text html latex example setupVars.bgx text html latex example ** building package indices ... * DONE (bgx)