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Package 29/234 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
bgx1.1.4Ernest TurroLast Changed Date: 2007-05-20 16:46:53 -0700 Last Changed Rev: 24863 | lamb1 | Linux (SUSE 10.1) | x86_64 | [ OK ] | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | N O T S U P P O R T E D | |||
lemming | Windows Server 2003 (32-bit) | x64 | OK | TIMEOUT | OK |
Package: bgx |
Version: 1.1.4 |
Command: /home/biocbuild/bbs-2.1-bioc/R/bin/R CMD build bgx |
RetCode: 0 |
Time: 61.5 seconds |
Status: OK |
PackageFile: bgx_1.1.4.tar.gz |
* checking for file 'bgx/DESCRIPTION' ... OK * preparing 'bgx': * checking DESCRIPTION meta-information ... OK * cleaning src * checking whether 'INDEX' is up-to-date ... OK * installing the package to re-build vignettes * Installing *source* package 'bgx' ... checking for gcc... gcc -std=gnu99 checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc -std=gnu99 accepts -g... yes checking for gcc -std=gnu99 option to accept ISO C89... none needed checking for C compiler vendor... gnu checking whether C compiler accepts -ffast-math... yes checking whether C compiler accepts -O3... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for gcc architecture flag... checking for x86 cpuid 0 output... a:756e6547:6c65746e:49656e69 checking for x86 cpuid 1 output... 6f6:7020800:4e3bd:bfebfbff checking whether C compiler accepts -march=pentiumpro... no checking whether C compiler accepts -mcpu=pentiumpro... no checking whether C compiler accepts -mpentiumpro... yes checking for gcc architecture flag... -mpentiumpro checking for gcc -std=gnu99 option to accept ISO C99... none needed checking for main in -lm... yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking build system type... (cached) x86_64-unknown-linux-gnu checking for boostlib >= 1.31.0... yes checking whether the Boost::Filesystem library is available... yes checking for main in -lboost_filesystem... yes checking whether the Boost::Program_Options library is available... yes checking for main in -lboost_program_options... yes checking whether the Boost::Thread library is available... yes checking for main in -lboost_thread... no checking for main in -lboost_thread-gcc... no checking for main in -l-std=gnu99... no checking for main in -lboost_thread-gcc... (cached) no checking for main in -l-std=gnu99-mt... no checking for main in -lboost_thread-gcc... (cached) no checking for main in -l-std=gnu99-mt-s... no checking for main in -lboost_thread-gcc... (cached) no checking for main in -l-std=gnu99-s... no checking for main in -llibboost_thread... no checking for main in -llibboost_thread-gcc... no checking for main in -l-std=gnu99... (cached) no checking for main in -llibboost_thread-gcc... (cached) no checking for main in -l-std=gnu99-mt... (cached) no checking for main in -llibboost_thread-gcc... (cached) no checking for main in -l-std=gnu99-mt-s... (cached) no checking for main in -llibboost_thread-gcc... (cached) no checking for main in -l-std=gnu99-s... (cached) no checking for main in -lboost_thread-mgw... no checking for main in -lboost_thread-mgw... (cached) no checking for main in -lboost_thread-mgw-mt... no checking for main in -lboost_thread-mgw-mt-s... no checking for main in -lboost_thread-mgw-s... no configure: Could not link against boost_thread-mgw-s ! checking whether the Boost::IOStreams library is available... yes checking for main in -lboost_iostreams... yes checking whether the Boost::Serialization library is available... yes checking for main in -lboost_serialization... yes checking for main in -lboost_wserialization... yes checking whether the Boost::Signals library is available... yes checking for main in -lboost_signals... yes checking whether the Boost::Date_Time library is available... yes checking for main in -lboost_date_time... yes checking whether the Boost::Regex library is available... yes checking for main in -lboost_regex... yes checking whether the Boost::UnitTestFramework library is available... yes checking the name of the Boost::UnitTestFramework library... checking for an ANSI C-conforming const... yes checking for inline... inline configure: creating ./config.status config.status: creating src/Makevars ** libs g++ -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -ffast-math -O3 -DUSING_R -c bgx.cc -o bgx.o g++ -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -ffast-math -O3 -DUSING_R -c bgx_frontend.cc -o bgx_frontend.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -g -O2 -mpentiumpro -ffast-math -O3 -c qnorm.c -o qnorm.o g++ -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -ffast-math -O3 -DUSING_R -c rundir.cc -o rundir.o g++ -I/home/biocbuild/bbs-2.1-bioc/R/include -I/home/biocbuild/bbs-2.1-bioc/R/include -I/usr/include -I/usr/local/include -fpic -g -O2 -Wall -ffast-math -O3 -DUSING_R -c sokal.cc -o sokal.o g++ -shared -L/usr/local/lib64 -o bgx.so bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -lm -L/home/biocbuild/bbs-2.1-bioc/R/lib -lR ** R ** inst ** preparing package for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affy Loading required package: affyio Loading required package: gcrma Loading required package: matchprobes Loading required package: splines ** help >>> Building/Updating help pages for package 'bgx' Formats: text html latex example analysis.bgx text html latex example bgx text html latex example mcmc.bgx text html latex example readOutput.bgx text html latex example saveAffinityPlot.bgx text html latex example setupVars.bgx text html latex example ** building package indices ... * DONE (bgx) * creating vignettes ... OK * cleaning src * removing junk files * checking for LF line-endings in source files * checking for empty or unneeded directories * building 'bgx_1.1.4.tar.gz'