Package: sscore

Version: 1.7.0

Command: D:\biocbld\2.0d\R\bin\R.exe CMD build sscore

RetCode: 1

Time: 15.5 seconds

Status: ERROR

PackageFile: None

* checking for file 'sscore/DESCRIPTION' ... OK
* preparing 'sscore':
* checking DESCRIPTION meta-information ... OK
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/2.0d/tmpdir/Rinst332066787


---------- Making package sscore ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'sscore'
     Formats: text html latex example chm 
  OneStepBiweightAlgorithm          text    html    latex           chm
  SScore                            text    html    latex   example chm
  SScoreBatch                       text    html    latex   example chm
  computeAffxRawQ                   text    html    latex           chm
  computeAffxSFandSDT               text    html    latex   example chm
  computeOutlier                    text    html    latex   example chm
  computeRawQ                       text    html    latex           chm
  computeSFandSDT                   text    html    latex   example chm
  computeZoneIInfo                  text    html    latex           chm
  computeZonenoise                  text    html    latex           chm
  trimMean                          text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\2.0d\Rpacks\sscore\chm\sscore.chm





Compile time: 0 minutes, 0 seconds

12	Topics

28	Local links

16	Internet links

1	Graphic





Created d:\biocbld\2.0d\Rpacks\sscore\chm\sscore.chm, 28,201 bytes

Compression decreased file by 16,720 bytes.

  preparing package sscore for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affyio
Loading required package: affxparser
  adding MD5 sums

* DONE (sscore)
* creating vignettes ... ERROR
Loading required package: affy
Loading required package: Biobase

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affyio
Loading required package: affxparser
Warning messages:
1: The phenoData class is deprecated, use AnnotatedDataFrame (with ExpressionSet) instead 
2: The exprSet class is deprecated, use ExpressionSet instead 

Error:  chunk 2 
Error in validObject(.Object) : invalid class "exprSet" object: invalid object for slot "notes" in class "exprSet": got class "list", should be or extend class "character"
Error in buildVignettes(dir = ".") : Error:  chunk 2 
Error in validObject(.Object) : invalid class "exprSet" object: invalid object for slot "notes" in class "exprSet": got class "list", should be or extend class "character"
Execution halted