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Package 194/208OSArchBUILDCHECKBUILD BIN

sscore

1.7.0

Richard Kennedy		Linux (SUSE 9.2) x86_64 ERROR skipped
Linux (SUSE 10.1) x86_64[ ERROR ]skipped
Linux (SUSE 9.2) i686 ERROR skipped
Solaris 2.9 sparc ERROR skipped
Windows Server 2003 x86_64 ERROR skippedskipped
Windows Server 2003 NA ERROR skippedskipped
Mac OS X (10.4.6) i686 OK  OK 
Package: sscore
Version: 1.7.0
Command: /home/biocbuild/2.0d/R/bin/R CMD build sscore
RetCode: 1
Time: 5.5 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'sscore/DESCRIPTION' ... OK
* preparing 'sscore':
* checking DESCRIPTION meta-information ... OK
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'sscore' ...
** R
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affyio
Loading required package: affxparser
** help
 >>> Building/Updating help pages for package 'sscore'
     Formats: text html latex example 
  OneStepBiweightAlgorithm          text    html    latex
  SScore                            text    html    latex   example
  SScoreBatch                       text    html    latex   example
  computeAffxRawQ                   text    html    latex
  computeAffxSFandSDT               text    html    latex   example
  computeOutlier                    text    html    latex   example
  computeRawQ                       text    html    latex
  computeSFandSDT                   text    html    latex   example
  computeZoneIInfo                  text    html    latex
  computeZonenoise                  text    html    latex
  trimMean                          text    html    latex
** building package indices ...
* DONE (sscore)
* creating vignettes ... ERROR
Loading required package: affy
Loading required package: Biobase

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affyio
Loading required package: affxparser
Warning messages:
1: The phenoData class is deprecated, use AnnotatedDataFrame (with ExpressionSet) instead 
2: The exprSet class is deprecated, use ExpressionSet instead 

Error:  chunk 2 
Error in validObject(.Object) : invalid class "exprSet" object: invalid object for slot "notes" in class "exprSet": got class "list", should be or extend class "character"
Error in buildVignettes(dir = ".") : Error:  chunk 2 
Error in validObject(.Object) : invalid class "exprSet" object: invalid object for slot "notes" in class "exprSet": got class "list", should be or extend class "character"
Execution halted