Package: SNPchip

Version: 0.1.44

Command: D:\biocbld\2.0d\R\bin\R.exe CMD build SNPchip

RetCode: 1

Time: 32.5 seconds

Status: ERROR

PackageFile: None

* checking for file 'SNPchip/DESCRIPTION' ... OK
* preparing 'SNPchip':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/2.0d/tmpdir/Rinst588862261


---------- Making package SNPchip ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: geneplotter
Loading required package: annotate
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: oligo
Loading required package: affyio
Loading required package: splines

Welcome to the oligo Package!

    This package is under development,
    and therefore its documentation is
    to be improved. Please contact Benilton
    at bcarvalh  jhsph  edu,
    in case you need further help.
Creating a new generic function for "summary" in "SNPchip"
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'SNPchip'
     Formats: text html latex example chm 
  AnnotatedSnpCallSet-class         text    html    latex   example chm
  AnnotatedSnpCopyNumberSet-class   text    html    latex   example chm
  AnnotatedSnpSet-class             text    html    latex   example chm
  AnnotatedSnpSetList-class         text    html    latex   example chm
  accessors                         text    html    latex   example chm
  addFeatureData-method             text    html    latex           chm
  alleleA-methods                   text    html    latex           chm
  alleleB-methods                   text    html    latex           chm
  annSnpset                         text    html    latex   example chm
  chromosome-methods                text    html    latex           chm
  chromosomeAnnotation-methods      text    html    latex           chm
  chromosomeAnnotation              text    html    latex   example chm
  coerce-methods                    text    html    latex           chm
  copyNumber-methods                text    html    latex           chm
  cytoband                          text    html    latex   example chm
  dbSnpId-methods                   text    html    latex           chm
  enzyme-methods                    text    html    latex           chm
  hapmap                            text    html    latex   example chm
  initialize-methods                text    html    latex           chm
  plotChromosome-methods            text    html    latex           chm
  plotCytoband-methods              text    html    latex           chm
  plotSnp-methods                   text    html    latex   example chm
  position-methods                  text    html    latex           chm
  probeSetId-methods                text    html    latex           chm
  show-methods                      text    html    latex           chm
  smoothSnp-methods                 text    html    latex           chm
  snpSetList-methods                text    html    latex           chm
  summary-methods                   text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\2.0d\Rpacks\SNPchip\chm\SNPchip.chm





Compile time: 0 minutes, 0 seconds

29	Topics

130	Local links

1	Internet link

1	Graphic





Created d:\biocbld\2.0d\Rpacks\SNPchip\chm\SNPchip.chm, 30,284 bytes

Compression decreased file by 53,411 bytes.

  adding MD5 sums

* DONE (SNPchip)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: geneplotter
Loading required package: annotate
Loading required package: lattice
Loading required package: oligo
Loading required package: affyio
Loading required package: splines

Welcome to the oligo Package!

    This package is under development,
    and therefore its documentation is
    to be improved. Please contact Benilton
    at bcarvalh  jhsph  edu,
    in case you need further help.

Error:  chunk 22 (label=smoothSnp) 
Error in assayDataNew(calls = calls, callsConfidence = callsConfidence,  : 
	featureNames differ between AssayData members
Error in buildVignettes(dir = ".") : Error:  chunk 22 (label=smoothSnp) 
Error in assayDataNew(calls = calls, callsConfidence = callsConfidence,  : 
	featureNames differ between AssayData members
Execution halted