0.1.44Robert Scharpf | Linux (SUSE 9.2) | x86_64 | ERROR | skipped | |
| Linux (SUSE 10.1) | x86_64 | [ ERROR ] | skipped | |
| Linux (SUSE 9.2) | i686 | ERROR | skipped | |
| Solaris 2.9 | sparc | ERROR | skipped | |
| Windows Server 2003 | x86_64 | ERROR | skipped | skipped |
| Windows Server 2003 | NA | ERROR | skipped | skipped |
| Mac OS X (10.4.6) | i686 | ERROR | skipped | |
* checking for file 'SNPchip/DESCRIPTION' ... OK
* preparing 'SNPchip':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'SNPchip' ...
** R
** data
** inst
** save image
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: geneplotter
Loading required package: annotate
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: oligo
Loading required package: affyio
Loading required package: splines
Welcome to the oligo Package!
This package is under development,
and therefore its documentation is
to be improved. Please contact Benilton
at bcarvalh jhsph edu,
in case you need further help.
Creating a new generic function for "summary" in "SNPchip"
** help
>>> Building/Updating help pages for package 'SNPchip'
Formats: text html latex example
AnnotatedSnpCallSet-class text html latex example
AnnotatedSnpCopyNumberSet-class text html latex example
AnnotatedSnpSet-class text html latex example
AnnotatedSnpSetList-class text html latex example
accessors text html latex example
addFeatureData-method text html latex
alleleA-methods text html latex
alleleB-methods text html latex
annSnpset text html latex example
chromosome-methods text html latex
chromosomeAnnotation-methods text html latex
chromosomeAnnotation text html latex example
coerce-methods text html latex
copyNumber-methods text html latex
cytoband text html latex example
dbSnpId-methods text html latex
enzyme-methods text html latex
hapmap text html latex example
initialize-methods text html latex
plotChromosome-methods text html latex
plotCytoband-methods text html latex
plotSnp-methods text html latex example
position-methods text html latex
probeSetId-methods text html latex
show-methods text html latex
smoothSnp-methods text html latex
snpSetList-methods text html latex
summary-methods text html latex
** building package indices ...
* DONE (SNPchip)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: geneplotter
Loading required package: annotate
Loading required package: lattice
Loading required package: oligo
Loading required package: affyio
Loading required package: splines
Welcome to the oligo Package!
This package is under development,
and therefore its documentation is
to be improved. Please contact Benilton
at bcarvalh jhsph edu,
in case you need further help.
Error: chunk 22 (label=smoothSnp)
Error in assayDataNew(calls = calls, callsConfidence = callsConfidence, :
featureNames differ between AssayData members
Error in buildVignettes(dir = ".") : Error: chunk 22 (label=smoothSnp)
Error in assayDataNew(calls = calls, callsConfidence = callsConfidence, :
featureNames differ between AssayData members
Execution halted