* checking for file 'LPEP/DESCRIPTION' ... OK
* preparing 'LPEP':
* checking DESCRIPTION meta-information ... OK
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
installing R.css in D:/biocbld/2.0d/tmpdir/Rinst550416323
---------- Making package LPEP ------------
adding build stamp to DESCRIPTION
installing R files
installing inst files
installing data files
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'LPEP'
Formats: text html latex example chm
am.trans.paired text html latex chm
base.error.paired text html latex chm
base.error.step1 text html latex chm
base.error.step2 text html latex chm
hd text html latex chm
lowess.normal text html latex chm
lpe.paired text html latex example chm
missing link(s): lpe
lpep.preproc text html latex example chm
n.genes.adaptive.interval text html latex chm
platelet text html latex chm
quant.normal text html latex chm
quant.normal2 text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\2.0d\Rpacks\LPEP\chm\LPEP.chm
Compile time: 0 minutes, 0 seconds
13 Topics
25 Local links
0 Internet links
1 Graphic
Created d:\biocbld\2.0d\Rpacks\LPEP\chm\LPEP.chm, 19,859 bytes
Compression decreased file by 1,622 bytes.
adding MD5 sums
* DONE (LPEP)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: LPE
Error: chunk 1 (label=nameOfChung)
Error in lpe.paired(x, design, q = 0.1, probe.ID = 1:nrow(x), min.probes.int = 10, :
unused argument(s) (min.probes.int = 10, max.probes.int = 50)
Error in buildVignettes(dir = ".") : Error: chunk 1 (label=nameOfChung)
Error in lpe.paired(x, design, q = 0.1, probe.ID = 1:nrow(x), min.probes.int = 10, :
unused argument(s) (min.probes.int = 10, max.probes.int = 50)
Execution halted