* checking for file 'LPEP/DESCRIPTION' ... OK
* preparing 'LPEP':
* checking DESCRIPTION meta-information ... OK
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'LPEP' ...
** R
** data
** inst
** help
>>> Building/Updating help pages for package 'LPEP'
Formats: text html latex example
am.trans.paired text html latex
base.error.paired text html latex
base.error.step1 text html latex
base.error.step2 text html latex
hd text html latex
lowess.normal text html latex
lpe.paired text html latex example
lpep.preproc text html latex example
n.genes.adaptive.interval text html latex
platelet text html latex
quant.normal text html latex
quant.normal2 text html latex
** building package indices ...
* DONE (LPEP)
* creating vignettes ... ERROR
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: LPE
Error: chunk 1 (label=nameOfChung)
Error in lpe.paired(x, design, q = 0.1, probe.ID = 1:nrow(x), min.probes.int = 10, :
unused argument(s) (min.probes.int = 10, max.probes.int = 50)
Error in buildVignettes(dir = ".") : Error: chunk 1 (label=nameOfChung)
Error in lpe.paired(x, design, q = 0.1, probe.ID = 1:nrow(x), min.probes.int = 10, :
unused argument(s) (min.probes.int = 10, max.probes.int = 50)
Execution halted