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| Package 166/208 | OS | Arch | BUILD | CHECK | BUILD BIN |
Rgraphviz1.13.4Jeff Gentry | Linux (SUSE 9.2) | x86_64 | ERROR | skipped | |
| Linux (SUSE 10.1) | x86_64 | OK | [ WARNINGS ] | ||
| Linux (SUSE 9.2) | i686 | ERROR | skipped | ||
| Solaris 2.9 | sparc | ERROR | skipped | ||
| Windows Server 2003 | x86_64 | ERROR | skipped | skipped | |
| Windows Server 2003 | NA | ERROR | skipped | skipped | |
| Mac OS X (10.4.6) | i686 | OK | ERROR |
| Package: Rgraphviz |
| Version: 1.13.4 |
| Command: /home/biocbuild/2.0d/R/bin/R CMD check Rgraphviz_1.13.4.tar.gz |
| RetCode: 0 |
| Time: 79.3 seconds |
| Status: WARNINGS |
| CheckDir: Rgraphviz.Rcheck |
| Warnings: 1 |
* checking for working latex ... OK * using log directory '/home/biocbuild/2.0d/Rpacks/Rgraphviz.Rcheck' * using R version 2.5.0 Under development (unstable) (2006-12-05 r40126) * checking for file 'Rgraphviz/DESCRIPTION' ... OK * this is package 'Rgraphviz' version '1.13.4' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'Rgraphviz' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... WARNING Warning: '\#' is an unrecognized escape in a character string Warning: unrecognized escape removed from "\" USEMAP=\#" * checking R files for non-ASCII characters ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $BLAS_LIBS ... OK * creating Rgraphviz-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating Rgraphviz-manual.tex ... OK * checking Rgraphviz-manual.tex ... OK WARNING: There was 1 warning, see /home/biocbuild/2.0d/Rpacks/Rgraphviz.Rcheck/00check.log for details
Rgraphviz.Rcheck/00install.out:
* Installing *source* package 'Rgraphviz' ...
checking for pkg-config... /usr/bin/pkg-config
configure: Found graphviz 2.12
test
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include/graphviz -DGRAPHVIZ_2_10_TO_MORE -I/usr/local/include -fpic -g -O2 -Wall -c agopen.c -o agopen.o
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include/graphviz -DGRAPHVIZ_2_10_TO_MORE -I/usr/local/include -fpic -g -O2 -Wall -c agread.c -o agread.o
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include/graphviz -DGRAPHVIZ_2_10_TO_MORE -I/usr/local/include -fpic -g -O2 -Wall -c agwrite.c -o agwrite.o
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include/graphviz -DGRAPHVIZ_2_10_TO_MORE -I/usr/local/include -fpic -g -O2 -Wall -c bezier.c -o bezier.o
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include/graphviz -DGRAPHVIZ_2_10_TO_MORE -I/usr/local/include -fpic -g -O2 -Wall -c buildEdgeList.c -o buildEdgeList.o
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include/graphviz -DGRAPHVIZ_2_10_TO_MORE -I/usr/local/include -fpic -g -O2 -Wall -c buildNodeList.c -o buildNodeList.o
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include/graphviz -DGRAPHVIZ_2_10_TO_MORE -I/usr/local/include -fpic -g -O2 -Wall -c doLayout.c -o doLayout.o
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include/graphviz -DGRAPHVIZ_2_10_TO_MORE -I/usr/local/include -fpic -g -O2 -Wall -c graphvizVersion.c -o graphvizVersion.o
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include/graphviz -DGRAPHVIZ_2_10_TO_MORE -I/usr/local/include -fpic -g -O2 -Wall -c init.c -o init.o
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include/graphviz -DGRAPHVIZ_2_10_TO_MORE -I/usr/local/include -fpic -g -O2 -Wall -c LL_funcs.c -o LL_funcs.o
LL_funcs.c: In function 'Rgraphviz_getDefAttrsGraph':
LL_funcs.c:67: warning: unused variable 'at_val'
LL_funcs.c:67: warning: unused variable 'at_name'
LL_funcs.c: In function 'Rgraphviz_toFile':
LL_funcs.c:449: warning: unused variable 'i3'
LL_funcs.c:447: warning: unused variable 'i2'
LL_funcs.c:445: warning: unused variable 'i1'
LL_funcs.c: In function 'Rgraphviz_getDefAttrsEdge':
LL_funcs.c:368: warning: 'val' may be used uninitialized in this function
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include/graphviz -DGRAPHVIZ_2_10_TO_MORE -I/usr/local/include -fpic -g -O2 -Wall -c Rgraphviz.c -o Rgraphviz.o
gcc -std=gnu99 -I/home/biocbuild/2.0d/R/include -I/home/biocbuild/2.0d/R/include -I/usr/local/include/graphviz -DGRAPHVIZ_2_10_TO_MORE -I/usr/local/include -fpic -g -O2 -Wall -c RgraphvizInit.c -o RgraphvizInit.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o Rgraphviz.so agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o LL_funcs.o Rgraphviz.o RgraphvizInit.o -L/usr/local/lib -lgvc
** R
** inst
** save image
Loading required package: graph
Loading required package: geneplotter
Loading required package: annotate
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Creating a new generic function for "lines" in "Rgraphviz"
Creating a new generic function for "plot" in "Rgraphviz"
Warning messages:
1: '\#' is an unrecognized escape in a character string
2: unrecognized escape removed from "\" USEMAP=\#"
** help
>>> Building/Updating help pages for package 'Rgraphviz'
Formats: text html latex example
AgEdge-class text html latex example
AgNode-class text html latex example
AgTextLabel-class text html latex example
BezierCurve-class text html latex example
GraphvizAttributes text html latex example
GraphvizLayouts text html latex example
Ragraph-class text html latex example
agopen text html latex example
agwrite text html latex example
boundingBox-class text html latex example
buildNodeList text html latex example
getAttrs text html latex example
getDefAttrs text html latex example
getDefaultAttrs text html latex example
graphvizVersion text html latex example
imageMap text html latex example
layoutGraph text html latex example
makeNodeAttrs text html latex example
pEdge-class text html latex example
pNode-class text html latex example
pieGlyph text html latex example
plot-methods text html latex example
removedEdges text html latex example
setAttrs text html latex example
toDot-methods text html latex example
toFile text html latex example
xyPoint-class text html latex example
** building package indices ...
* DONE (Rgraphviz)