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Package 166/208OSArchBUILDCHECKBUILD BIN

Rgraphviz

1.13.4

Jeff Gentry		Linux (SUSE 9.2) x86_64 ERROR skipped
Linux (SUSE 10.1) x86_64 OK  WARNINGS 
Linux (SUSE 9.2) i686 ERROR skipped
Solaris 2.9 sparc ERROR skipped
Windows Server 2003 x86_64 ERROR skippedskipped
Windows Server 2003 NA ERROR skippedskipped
Mac OS X (10.4.6) i686[ OK ] ERROR 
Package: Rgraphviz
Version: 1.13.4
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build Rgraphviz
RetCode: 0
Time: 45.5 seconds
Status: OK
PackageFile: Rgraphviz_1.13.4.tar.gz

Command output

* checking for file 'Rgraphviz/DESCRIPTION' ... OK
* preparing 'Rgraphviz':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'Rgraphviz' ...
checking for pkg-config... /opt/local/bin/pkg-config
configure: Found graphviz 2.8
configure: creating ./config.status
config.status: creating src/Makevars
** libs
** arch - i386
gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/opt/local/include/graphviz    -DGRAPHVIZ_2_4_TO_2_9 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c LL_funcs.c -o LL_funcs.o
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gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/opt/local/include/graphviz    -DGRAPHVIZ_2_4_TO_2_9 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c Rgraphviz.c -o Rgraphviz.o
Rgraphviz.c: In function 'getListElement':
Rgraphviz.c:50: warning: implicit declaration of function 'Rf_type2char'
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gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/opt/local/include/graphviz    -DGRAPHVIZ_2_4_TO_2_9 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c RgraphvizInit.c -o RgraphvizInit.o
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gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/opt/local/include/graphviz    -DGRAPHVIZ_2_4_TO_2_9 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c agopen.c -o agopen.o
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gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/opt/local/include/graphviz    -DGRAPHVIZ_2_4_TO_2_9 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c agread.c -o agread.o
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gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/opt/local/include/graphviz    -DGRAPHVIZ_2_4_TO_2_9 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c agwrite.c -o agwrite.o
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gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/opt/local/include/graphviz    -DGRAPHVIZ_2_4_TO_2_9 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c bezier.c -o bezier.o
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gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/opt/local/include/graphviz    -DGRAPHVIZ_2_4_TO_2_9 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c buildEdgeList.c -o buildEdgeList.o
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gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/opt/local/include/graphviz    -DGRAPHVIZ_2_4_TO_2_9 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c buildNodeList.c -o buildNodeList.o
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gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/opt/local/include/graphviz    -DGRAPHVIZ_2_4_TO_2_9 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c doLayout.c -o doLayout.o
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gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/opt/local/include/graphviz    -DGRAPHVIZ_2_4_TO_2_9 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c graphvizVersion.c -o graphvizVersion.o
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gcc-4.0 -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/opt/local/include/graphviz    -DGRAPHVIZ_2_4_TO_2_9 -msse3  -D__NO_MATH_INLINES  -fPIC  -g -O2 -std=gnu99 -march=pentium-m -mtune=prescott -c init.c -o init.o
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gcc-4.0 -arch i386 -dynamiclib -Wl,-macosx_version_min -Wl,10.3 -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Rgraphviz.so LL_funcs.o Rgraphviz.o RgraphvizInit.o agopen.o agread.o agwrite.o bezier.o buildEdgeList.o buildNodeList.o doLayout.o graphvizVersion.o init.o -L/opt/local/lib/graphviz -lgvc    -F/Library/Frameworks/R.framework/.. -framework R
** R
** inst
** save image
Loading required package: graph
Loading required package: geneplotter
Loading required package: annotate
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Creating a new generic function for "lines" in "Rgraphviz"
Creating a new generic function for "plot" in "Rgraphviz"
Warning message:
'\#' is an unrecognized escape in a character string 
** help
 >>> Building/Updating help pages for package 'Rgraphviz'
     Formats: text html latex example 
  AgEdge-class                      text    html    latex   example
  AgNode-class                      text    html    latex   example
  AgTextLabel-class                 text    html    latex   example
  BezierCurve-class                 text    html    latex   example
  GraphvizAttributes                text    html    latex   example
  GraphvizLayouts                   text    html    latex   example
  Ragraph-class                     text    html    latex   example
  agopen                            text    html    latex   example
  agwrite                           text    html    latex   example
  boundingBox-class                 text    html    latex   example
  buildNodeList                     text    html    latex   example
  getAttrs                          text    html    latex   example
  getDefAttrs                       text    html    latex   example
  getDefaultAttrs                   text    html    latex   example
  graphvizVersion                   text    html    latex   example
  imageMap                          text    html    latex   example
  layoutGraph                       text    html    latex   example
  makeNodeAttrs                     text    html    latex   example
  pEdge-class                       text    html    latex   example
  pNode-class                       text    html    latex   example
  pieGlyph                          text    html    latex   example
  plot-methods                      text    html    latex   example
  removedEdges                      text    html    latex   example
  setAttrs                          text    html    latex   example
  toDot-methods                     text    html    latex   example
  toFile                            text    html    latex   example
  xyPoint-class                     text    html    latex   example
** building package indices ...
* DONE (Rgraphviz)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'Rgraphviz_1.13.4.tar.gz'