Package: makecdfenv

Version: 1.12.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD check makecdfenv_1.12.0.tar.gz

RetCode: 0

Time: 275.1 seconds

Status: OK

CheckDir: makecdfenv.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.9d/Rpacks/makecdfenv.Rcheck'
* using R version 2.4.0 (2006-10-03)
* checking for file 'makecdfenv/DESCRIPTION' ... OK
* this is package 'makecdfenv' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'makecdfenv' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating makecdfenv-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating makecdfenv-manual.tex ... OK
* checking makecdfenv-manual.tex ... OK

* Installing *source* package 'makecdfenv' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -DHAVE_ZLIB=1  -I/usr/local/include    -fPIC  -g -O2 -std=gnu99 -Wall -c read_cdffile.c -o read_cdffile.o
read_cdffile.c: In function 'fillCharFromLine':
read_cdffile.c:396: warning: implicit declaration of function 'index'
read_cdffile.c:396: warning: incompatible implicit declaration of built-in function 'index'
read_cdffile.c: In function 'readQC':
read_cdffile.c:652: warning: incompatible implicit declaration of built-in function 'index'
read_cdffile.c:565: warning: unused variable 'param_unit'
gcc -G -L/usr/local/lib -o makecdfenv.so read_cdffile.o -lz   
** R
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy
Loading required package: affyio
** help
 >>> Building/Updating help pages for package 'makecdfenv'
     Formats: text html latex example 
  Cdf-class                         text    html    latex
  getInfoInAffyFile                 text    html    latex
  make.cdf.env                      text    html    latex   example
  make.cdf.package                  text    html    latex   example
  pmormm                            text    html    latex
  read.cdffile                      text    html    latex   example
** building package indices ...
* DONE (makecdfenv)