Package: makecdfenv

Version: 1.12.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD build makecdfenv

RetCode: 0

Time: 23.6 seconds

Status: OK

PackageFile: makecdfenv_1.12.0.tar.gz

* checking for file 'makecdfenv/DESCRIPTION' ... OK
* preparing 'makecdfenv':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'makecdfenv' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -DHAVE_ZLIB=1  -I/usr/local/include    -fPIC  -g -O2 -std=gnu99 -Wall -c read_cdffile.c -o read_cdffile.o
read_cdffile.c: In function 'fillCharFromLine':
read_cdffile.c:396: warning: implicit declaration of function 'index'
read_cdffile.c:396: warning: incompatible implicit declaration of built-in function 'index'
read_cdffile.c: In function 'readQC':
read_cdffile.c:652: warning: incompatible implicit declaration of built-in function 'index'
read_cdffile.c:565: warning: unused variable 'param_unit'
gcc -G -L/usr/local/lib -o makecdfenv.so read_cdffile.o -lz   
** R
** inst
** save image
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

Loading required package: affy
Loading required package: affyio
** help
 >>> Building/Updating help pages for package 'makecdfenv'
     Formats: text html latex example 
  Cdf-class                         text    html    latex
  getInfoInAffyFile                 text    html    latex
  make.cdf.env                      text    html    latex   example
  make.cdf.package                  text    html    latex   example
  pmormm                            text    html    latex
  read.cdffile                      text    html    latex   example
** building package indices ...
* DONE (makecdfenv)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'makecdfenv_1.12.0.tar.gz'