* checking for file 'GEOquery/DESCRIPTION' ... OK
* preparing 'GEOquery':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
installing R.css in D:/biocbld/1.8d/tmpdir/Rinst708411523
---------- Making package GEOquery ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'GEOquery'
Formats: text html latex example chm
GDS-class text html latex chm
GDS2MA text html latex example chm
GEOData-class text html latex chm
missing link(s): dataTable-class
GEODataTable-class text html latex chm
GPL-class text html latex chm
GSE-class text html latex chm
GSM-class text html latex chm
getGEO text html latex example chm
getGEOfile text html latex example chm
parseGEO text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\1.8d\Rpacks\GEOquery\chm\GEOquery.chm
Compile time: 0 minutes, 0 seconds
11 Topics
49 Local links
1 Internet link
1 Graphic
Created d:\biocbld\1.8d\Rpacks\GEOquery\chm\GEOquery.chm, 28,135 bytes
Compression decreased file by 7,969 bytes.
adding MD5 sums
* DONE (GEOquery)
* creating vignettes ... ERROR
trying URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SOFT/GDS/GDS1.soft.gz'
ftp data connection made, file length 162393 bytes
opened URL
downloaded 158Kb
trying URL 'http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?targ=self&acc=GSM3&form=text&view=full'
Content type 'geo/text' length unknown
opened URL
downloaded 213Kb
trying URL 'ftp://ftp.ncbi.nih.gov/pub/geo/data/geo/by_series/GSE462/GSE462_family.soft.gz'
Error: chunk 6
Error in download.file(myurl, destfile, mode = mode) :
cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/data/geo/by_series/GSE462/GSE462_family.soft.gz'
Error in buildVignettes(dir = ".") : Error: chunk 6
Error in download.file(myurl, destfile, mode = mode) :
cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/data/geo/by_series/GSE462/GSE462_family.soft.gz'
Execution halted