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Package 63/172OSArchBUILDCHECKBUILD BIN

GEOquery

1.7.2

Sean Davis		Linux (SUSE 9.2) x86_64 ERROR skipped
Linux (SUSE 9.2) i686 ERROR skipped
Solaris 2.9 sparc ERROR skipped
Linux (SUSE 10.0) x86_64[ ERROR ]skipped
Windows Server 2003 x86_64 ERROR skippedskipped
Package: GEOquery
Version: 1.7.2
Command: /home/biocbuild/1.8d/R/bin/R CMD build GEOquery
RetCode: 1
Time: 6.9 seconds
Status: ERROR
PackageFile: None

Command output

* checking for file 'GEOquery/DESCRIPTION' ... OK
* preparing 'GEOquery':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'GEOquery' ...
** R
** inst
** help
 >>> Building/Updating help pages for package 'GEOquery'
     Formats: text html latex example 
  GDS-class                         text    html    latex
  GDS2MA                            text    html    latex   example
  GEOData-class                     text    html    latex
     missing link(s):  dataTable-class
  GEODataTable-class                text    html    latex
  GPL-class                         text    html    latex
  GSE-class                         text    html    latex
  GSM-class                         text    html    latex
  getGEO                            text    html    latex   example
  getGEOfile                        text    html    latex   example
  parseGEO                          text    html    latex
** building package indices ...
* DONE (GEOquery)
* creating vignettes ... ERROR
trying URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SOFT/GDS/GDS1.soft.gz'
ftp data connection made, file length 162393 bytes
opened URL
==================================================
downloaded 158Kb

trying URL 'http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?targ=self&acc=GSM3&form=text&view=full'
Content type 'geo/text' length unknown
opened URL
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... ...
downloaded 213Kb

trying URL 'ftp://ftp.ncbi.nih.gov/pub/geo/data/geo/by_series/GSE462/GSE462_family.soft.gz'

Error:  chunk 6 
Error in download.file(myurl, destfile, mode = mode) : 
	cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/data/geo/by_series/GSE462/GSE462_family.soft.gz'
Error in buildVignettes(dir = ".") : Error:  chunk 6 
Error in download.file(myurl, destfile, mode = mode) : 
	cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/data/geo/by_series/GSE462/GSE462_family.soft.gz'
Execution halted