Package: RedeR

Version: 1.31.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RedeR_1.31.0.tar.gz

StartedAt: 2019-04-09 03:15:10 -0400 (Tue, 09 Apr 2019)

EndedAt: 2019-04-09 03:16:00 -0400 (Tue, 09 Apr 2019)

EllapsedTime: 49.8 seconds

RetCode: 0

Status:  OK

CheckDir: RedeR.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RedeR.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RedeR_1.31.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.9-bioc/meat/RedeR.Rcheck’
* using R Under development (unstable) (2018-11-27 r75683)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘1.31.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    java   4.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.9-bioc/meat/RedeR.Rcheck/00check.log’
for details.

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RedeR
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘RedeR’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RedeR)

name	user	system	elapsed
RedPort-class	0.003	0.000	0.004
RedPort	0	0	0
RedeR.data	0.460	0.026	0.495
addEdgeBetweenContainers	0.014	0.001	0.015
addEdges	0.010	0.001	0.011
addGraph	0.012	0.001	0.013
addLegend	0.012	0.001	0.013
addNodes	0.017	0.002	0.019
addSeries	0.013	0.001	0.013
addSubgraph	0.013	0.001	0.014
addSubgraph.list	0.013	0.001	0.014
att	0.041	0.002	0.044
calld	0.001	0.001	0.001
cea	0.016	0.002	0.018
deSelectEdges	0.012	0.001	0.012
deSelectGraph	0.012	0.001	0.012
deSelectNodes	0.012	0.001	0.013
deleteEdges	0.012	0.001	0.013
deleteNodes	0.008	0.000	0.008
deleteSelectedEdges	0.010	0.001	0.011
deleteSelectedNodes	0.013	0.000	0.013
duplicateGraph	0.013	0.000	0.013
exitd	0.001	0.000	0.001
getContainerComponets	0.009	0.001	0.009
getEdgeIDs	0.012	0.000	0.013
getEdges	0.008	0.000	0.009
getGraph	0.011	0.001	0.012
getNodeIDs	0.009	0.001	0.009
getNodes	0.013	0.001	0.015
getSourceEdgeIDs	0.013	0.001	0.014
getTargetEdgeIDs	0.012	0.001	0.013
gtoy.rm	0.000	0.000	0.001
isDynamicsActive	0.001	0.000	0.001
mergeNodes	0.010	0.001	0.011
mergeOutEdges	0.013	0.001	0.015
nestNodes	0.014	0.001	0.014
nesthc	1.392	0.073	1.481
ping	0.001	0.000	0.002
relax	0.013	0.001	0.015
resetd	0.001	0.000	0.001
selectAllEdges	0.010	0.001	0.011
selectAllNodes	0.010	0.001	0.011
selectEdges	0.011	0.000	0.011
selectGraph	0.008	0.000	0.009
selectNodes	0.012	0.002	0.013
setArrowDirection	0.009	0.001	0.010
subg	0.049	0.005	0.055
updateContainerSize	0.009	0.001	0.010
updateGraph	0.009	0.001	0.011
version	0.001	0.000	0.001