Mauro Castro
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/RedeR |
| Branch: RELEASE_3_9 |
| Last Commit: 845a380 |
| Last Changed Date: 2019-07-21 20:09:38 -0400 (Sun, 21 Jul 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:00:06 -0400 (Wed, 16 Oct 2019).
| Package 1347/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| RedeR 1.32.2 Mauro Castro
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: RedeR |
| Version: 1.32.2 |
| Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:RedeR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings RedeR_1.32.2.tar.gz |
| StartedAt: 2019-10-16 04:24:38 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 04:25:27 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 48.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RedeR.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:RedeR.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings RedeR_1.32.2.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/RedeR.Rcheck’
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘1.32.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 8.1Mb
sub-directories of 1Mb or more:
data 3.3Mb
java 4.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.9-bioc/meat/RedeR.Rcheck/00check.log’
for details.
RedeR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL RedeR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘RedeR’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RedeR)
RedeR.Rcheck/RedeR-Ex.timings
| name | user | system | elapsed | |
| RedPort-class | 0.004 | 0.000 | 0.004 | |
| RedPort | 0.000 | 0.000 | 0.001 | |
| RedeR.data | 0.505 | 0.024 | 0.530 | |
| addEdgeBetweenContainers | 0.013 | 0.004 | 0.017 | |
| addEdges | 0.011 | 0.000 | 0.012 | |
| addGraph | 0.011 | 0.000 | 0.011 | |
| addLegend | 0.011 | 0.000 | 0.011 | |
| addNodes | 0.012 | 0.000 | 0.012 | |
| addSeries | 0.019 | 0.000 | 0.019 | |
| addSubgraph | 0.008 | 0.004 | 0.012 | |
| addSubgraph.list | 0.011 | 0.000 | 0.011 | |
| att | 0.038 | 0.000 | 0.038 | |
| calld | 0 | 0 | 0 | |
| cea | 0.016 | 0.000 | 0.016 | |
| deSelectEdges | 0.013 | 0.000 | 0.013 | |
| deSelectGraph | 0.017 | 0.000 | 0.017 | |
| deSelectNodes | 0.012 | 0.000 | 0.014 | |
| deleteEdges | 0.009 | 0.000 | 0.009 | |
| deleteNodes | 0.009 | 0.000 | 0.009 | |
| deleteSelectedEdges | 0.010 | 0.000 | 0.009 | |
| deleteSelectedNodes | 0.012 | 0.000 | 0.011 | |
| duplicateGraph | 0.012 | 0.000 | 0.012 | |
| exitd | 0.001 | 0.000 | 0.000 | |
| getContainerComponets | 0.056 | 0.000 | 0.057 | |
| getEdgeIDs | 0.011 | 0.000 | 0.011 | |
| getEdges | 0.012 | 0.000 | 0.013 | |
| getGraph | 0.011 | 0.000 | 0.012 | |
| getNodeIDs | 0.012 | 0.000 | 0.012 | |
| getNodes | 0.011 | 0.000 | 0.012 | |
| getSourceEdgeIDs | 0.011 | 0.000 | 0.012 | |
| getTargetEdgeIDs | 0.010 | 0.002 | 0.012 | |
| gtoy.rm | 0 | 0 | 0 | |
| isDynamicsActive | 0.001 | 0.000 | 0.000 | |
| mergeNodes | 0.013 | 0.000 | 0.012 | |
| mergeOutEdges | 0.016 | 0.000 | 0.016 | |
| nestNodes | 0.012 | 0.000 | 0.012 | |
| nesthc | 1.517 | 0.044 | 1.577 | |
| ping | 0.001 | 0.000 | 0.001 | |
| relax | 0.008 | 0.004 | 0.012 | |
| resetd | 0.000 | 0.001 | 0.001 | |
| selectAllEdges | 0.011 | 0.001 | 0.011 | |
| selectAllNodes | 0.012 | 0.000 | 0.012 | |
| selectEdges | 0.012 | 0.000 | 0.012 | |
| selectGraph | 0.012 | 0.000 | 0.011 | |
| selectNodes | 0.013 | 0.000 | 0.012 | |
| setArrowDirection | 0.013 | 0.000 | 0.013 | |
| subg | 0.068 | 0.000 | 0.068 | |
| updateContainerSize | 0.013 | 0.000 | 0.013 | |
| updateGraph | 0.013 | 0.000 | 0.012 | |
| version | 0.001 | 0.000 | 0.001 | |