Holger Schwender
| Snapshot Date: 2019-10-15 17:01:26 -0400 (Tue, 15 Oct 2019) |
| URL: https://git.bioconductor.org/packages/siggenes |
| Branch: RELEASE_3_9 |
| Last Commit: 6950015 |
| Last Changed Date: 2019-05-02 11:53:01 -0400 (Thu, 02 May 2019) |
| Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 12:18:54 -0400 (Wed, 16 Oct 2019).
| Package 1516/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| siggenes 1.58.0 Holger Schwender
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: siggenes |
| Version: 1.58.0 |
| Command: C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:siggenes.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings siggenes_1.58.0.tar.gz |
| StartedAt: 2019-10-16 07:07:47 -0400 (Wed, 16 Oct 2019) |
| EndedAt: 2019-10-16 07:09:21 -0400 (Wed, 16 Oct 2019) |
| EllapsedTime: 94.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: siggenes.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:siggenes.install-out.txt --library=C:\Users\biocbuild\bbs-3.9-bioc\R\library --no-vignettes --timings siggenes_1.58.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.9-bioc/meat/siggenes.Rcheck'
* using R version 3.6.1 (2019-07-05)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'siggenes/DESCRIPTION' ... OK
* this is package 'siggenes' version '1.58.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'siggenes' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'annotate:::getTDRows'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... NOTE
Foreign function call to a different package:
.C("get_stat_num_denum", ..., PACKAGE = "multtest")
See chapter 'System and foreign language interfaces' in the 'Writing R
Extensions' manual.
* checking R code for possible problems ... NOTE
.onAttach: no visible global function definition for 'winMenuAddItem'
Undefined global functions or variables:
winMenuAddItem
Consider adding
importFrom("utils", "winMenuAddItem")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.9-bioc/meat/siggenes.Rcheck/00check.log'
for details.
siggenes.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/siggenes_1.58.0.tar.gz && rm -rf siggenes.buildbin-libdir && mkdir siggenes.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=siggenes.buildbin-libdir siggenes_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL siggenes_1.58.0.zip && rm siggenes_1.58.0.tar.gz siggenes_1.58.0.zip
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
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install for i386
* installing *source* package 'siggenes' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'siggenes'
finding HTML links ... done
EBAM-class html
FindA0-class html
SAM-class html
chisq.ebam html
chisq.stat html
d.stat html
delta.plot html
denspr html
ebam html
ebamControl html
find.a0 html
findDelta html
fudge2 html
fuzzy.ebam html
help.ebam html
help.finda0 html
help.sam html
limma2sam html
link.genes html
link.siggenes html
list.siggenes html
md.plot html
nclass.wand html
pi0.est html
plotArguments html
plotFindArguments html
qvalue.cal html
rowWilcoxon html
sam html
sam.plot2 html
samControl html
siggenes-internal html
siggenes2excel html
siggenes2html html
sumSAM-class html
trend.ebam html
trend.stat html
wilc.ebam html
wilc.stat html
z.ebam html
** building package indices
** installing vignettes
'siggenes.Rnw'
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'siggenes' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'siggenes' as siggenes_1.58.0.zip
* DONE (siggenes)
* installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library'
package 'siggenes' successfully unpacked and MD5 sums checked
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siggenes.Rcheck/examples_i386/siggenes-Ex.timings
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siggenes.Rcheck/examples_x64/siggenes-Ex.timings
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