Back to Multiple platform build/check report for BioC 3.9 |
|
This page was generated on 2019-10-16 11:55:09 -0400 (Wed, 16 Oct 2019).
Package 1516/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
siggenes 1.58.0 Holger Schwender
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: siggenes |
Version: 1.58.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:siggenes.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings siggenes_1.58.0.tar.gz |
StartedAt: 2019-10-16 05:01:48 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 05:03:05 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 77.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: siggenes.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD check --install=check:siggenes.install-out.txt --library=/home/biocbuild/bbs-3.9-bioc/R/library --no-vignettes --timings siggenes_1.58.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.9-bioc/meat/siggenes.Rcheck’ * using R version 3.6.1 (2019-07-05) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘siggenes/DESCRIPTION’ ... OK * this is package ‘siggenes’ version ‘1.58.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘siggenes’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: ‘annotate:::getTDRows’ See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... NOTE Foreign function call to a different package: .C("get_stat_num_denum", ..., PACKAGE = "multtest") See chapter ‘System and foreign language interfaces’ in the ‘Writing R Extensions’ manual. * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.9-bioc/meat/siggenes.Rcheck/00check.log’ for details.
siggenes.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL siggenes ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘siggenes’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘siggenes.Rnw’ ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (siggenes)
siggenes.Rcheck/siggenes-Ex.timings
name | user | system | elapsed | |
EBAM-class | 0.001 | 0.000 | 0.000 | |
SAM-class | 0.001 | 0.000 | 0.000 | |
chisq.ebam | 0.001 | 0.000 | 0.000 | |
chisq.stat | 0 | 0 | 0 | |
delta.plot | 0 | 0 | 0 | |
denspr | 0 | 0 | 0 | |
ebam | 0.000 | 0.000 | 0.001 | |
find.a0 | 0.000 | 0.000 | 0.001 | |
help.ebam | 0.000 | 0.000 | 0.001 | |
help.finda0 | 0.000 | 0.000 | 0.001 | |
help.sam | 0 | 0 | 0 | |
list.siggenes | 0 | 0 | 0 | |
md.plot | 0 | 0 | 0 | |
pi0.est | 0 | 0 | 0 | |
qvalue.cal | 0 | 0 | 0 | |
sam | 0 | 0 | 0 | |
sam.plot2 | 0 | 0 | 0 | |
trend.ebam | 0 | 0 | 0 | |
trend.stat | 0.000 | 0.000 | 0.001 | |