Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 11:56:07 -0400 (Wed, 16 Oct 2019).
Package 742/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Harshlight 1.56.0 Maurizio Pellegrino
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | [ OK ] | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: Harshlight |
Version: 1.56.0 |
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL Harshlight |
StartedAt: 2019-10-15 18:41:44 -0400 (Tue, 15 Oct 2019) |
EndedAt: 2019-10-15 18:41:58 -0400 (Tue, 15 Oct 2019) |
EllapsedTime: 13.3 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD INSTALL Harshlight ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.9-bioc/R/library’ * installing *source* package ‘Harshlight’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c Harshlight.c -o Harshlight.o Harshlight.c: In function ‘extended_defects’: Harshlight.c:564:20: warning: variable ‘p_num_points’ set but not used [-Wunused-but-set-variable] int num_points, *p_num_points; //number of points inside the median kernel ^~~~~~~~~~~~ Harshlight.c: In function ‘image_dilation’: Harshlight.c:948:10: warning: variable ‘cell_value’ set but not used [-Wunused-but-set-variable] double cell_value; ^~~~~~~~~~ Harshlight.c: In function ‘norm’: Harshlight.c:1316:27: warning: unused variable ‘sorted2’ [-Wunused-variable] double *sorted; double *sorted2; ^~~~~~~ Harshlight.c: In function ‘report_overall_header’: Harshlight.c:1471:26: warning: unknown conversion type character ‘)’ in format [-Wformat=] PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br); ^ Harshlight.c:1474:26: warning: unknown conversion type character ‘)’ in format [-Wformat=] PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr); ^ Harshlight.c: In function ‘chip_summary’: Harshlight.c:1532:107: warning: unknown conversion type character ‘)’ in format [-Wformat=] PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var); ^ Harshlight.c:1542:26: warning: unknown conversion type character ‘)’ in format [-Wformat=] PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c); ^ Harshlight.c:1543:26: warning: unknown conversion type character ‘)’ in format [-Wformat=] PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d); ^ Harshlight.c: In function ‘extended_stop’: Harshlight.c:1555:107: warning: unknown conversion type character ‘)’ in format [-Wformat=] PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var); ^ gcc -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o Harshlight.so Harshlight.o -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.9-bioc/R/library/00LOCK-Harshlight/00new/Harshlight/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Harshlight)