Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2019-10-16 12:46:02 -0400 (Wed, 16 Oct 2019).
Package 742/1741 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Harshlight 1.56.0 Maurizio Pellegrino
| malbec2 | Linux (Ubuntu 18.04.2 LTS) / x86_64 | OK | OK | OK | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||
celaya2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] |
Package: Harshlight |
Version: 1.56.0 |
Command: rm -rf Harshlight.buildbin-libdir && mkdir Harshlight.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Harshlight_1.56.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Harshlight.buildbin-libdir |
StartedAt: 2019-10-16 08:44:45 -0400 (Wed, 16 Oct 2019) |
EndedAt: 2019-10-16 08:45:11 -0400 (Wed, 16 Oct 2019) |
EllapsedTime: 26.4 seconds |
RetCode: 0 |
Status: OK |
PackageFile: Harshlight_1.56.0.tgz |
PackageFileSize: 239.1 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf Harshlight.buildbin-libdir && mkdir Harshlight.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Harshlight_1.56.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Harshlight.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Harshlight.buildbin-libdir Harshlight_1.56.0.tar.gz' >>>>>>> * installing *source* package ‘Harshlight’ ... ** using staged installation ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c Harshlight.c -o Harshlight.o Harshlight.c:1316:27: warning: unused variable 'sorted2' [-Wunused-variable] double *sorted; double *sorted2; ^ Harshlight.c:1471:26: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier] PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 215, *diff_br); ~^ Harshlight.c:1474:26: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier] PP "%d %d moveto (%.2f%) show\n", x_text_val, y_text - 230, *diff_dr); ~^ Harshlight.c:1532:107: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier] PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var); ~^ Harshlight.c:1542:26: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier] PP "%d %d moveto (%.2f%) show\n", x_val_1, y_text - 100, *perc_c); ~^ Harshlight.c:1543:26: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier] PP "%d %d moveto (%.2f%) show\n", x_val_2, y_text - 100, *perc_d); ~^ Harshlight.c:1555:107: warning: invalid conversion specifier ')' [-Wformat-invalid-specifier] PP "%d %d moveto (Extended defects: the variance of the Error Image explained by the background is %.2f%) show\n", x_text, y_text - 30, *var); ~^ 7 warnings generated. clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Harshlight.so Harshlight.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.9-bioc/meat/Harshlight.buildbin-libdir/00LOCK-Harshlight/00new/Harshlight/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Harshlight) >>>>>>> >>>>>>> FIXING LINKS FOR Harshlight.buildbin-libdir/Harshlight/libs//Harshlight.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "Harshlight.buildbin-libdir/Harshlight/libs//Harshlight.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "Harshlight.buildbin-libdir/Harshlight/libs//Harshlight.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "Harshlight.buildbin-libdir/Harshlight/libs//Harshlight.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "Harshlight.buildbin-libdir/Harshlight/libs//Harshlight.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "Harshlight.buildbin-libdir/Harshlight/libs//Harshlight.so"