Back to Multiple platform build/check report for BioC 3.9 |
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This page was generated on 2018-10-29 10:21:51 -0400 (Mon, 29 Oct 2018).
Package 606/1642 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
Martin Slawski
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: GeneSelector |
Version: 2.31.2 |
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GeneSelector_2.31.2.tar.gz && rm -rf GeneSelector.buildbin-libdir && mkdir GeneSelector.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneSelector.buildbin-libdir GeneSelector_2.31.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GeneSelector_2.31.2.zip && rm GeneSelector_2.31.2.tar.gz GeneSelector_2.31.2.zip |
StartedAt: 2018-10-28 19:23:53 -0400 (Sun, 28 Oct 2018) |
EndedAt: 2018-10-28 19:26:37 -0400 (Sun, 28 Oct 2018) |
EllapsedTime: 164.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/GeneSelector_2.31.2.tar.gz && rm -rf GeneSelector.buildbin-libdir && mkdir GeneSelector.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneSelector.buildbin-libdir GeneSelector_2.31.2.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL GeneSelector_2.31.2.zip && rm GeneSelector_2.31.2.tar.gz GeneSelector_2.31.2.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 364k 100 364k 0 0 5585k 0 --:--:-- --:--:-- --:--:-- 6285k install for i386 * installing *source* package 'GeneSelector' ... ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c kendall.c -o kendall.o kendall.c: In function 'kendall': kendall.c:6:14: warning: 'tau' may be used uninitialized in this function [-Wmaybe-uninitialized] tau = tau + w[i] * w[j] * (((r[i] - r[j]) * (rprime[i] - rprime[j])) < 0); ^ C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c mcfour.c -o mcfour.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c mct.c -o mct.o C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o GeneSelector.dll tmp.def kendall.o mcfour.o mct.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/GeneSelector.buildbin-libdir/GeneSelector/libs/i386 ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GeneSelector' finding HTML links ... done AggregateMC html AggregatePenalty html AggregateSVD html AggregateSimple html AggregatedRanking-class html BootMatrix-class html FoldMatrix-class html GeneRanking-class html GeneSelector-package html GeneSelector html GeneSelectorOutput-class html GenerateBootMatrix html GenerateFoldMatrix html GetStabilityDistance html GetStabilityOverlap html GetStabilityUnion html HeatmapRankings html MergeMethods html RankingBaldiLong html RankingEbam html RankingFC html RankingFoxDimmic html RankingLimma html RankingPermutation html RankingSam html RankingShrinkageT html RankingSoftthresholdT html RankingTstat html RankingWelchT html RankingWilcEbam html RankingWilcoxon html RepeatRanking html RepeatedRanking-class html StabilityDistance-class html StabilityOverlap-class html StabilityUnion-class html dispersion,RepeatedRanking html internals html samplingcontrol html toplist-methods html toydata html ** building package indices ** installing vignettes ** testing if installed package can be loaded Warning: Package 'GeneSelector' is deprecated and will be removed from Bioconductor version 3.9 In R CMD INSTALL install for x64 * installing *source* package 'GeneSelector' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c kendall.c -o kendall.o kendall.c: In function 'kendall': kendall.c:6:14: warning: 'tau' may be used uninitialized in this function [-Wmaybe-uninitialized] tau = tau + w[i] * w[j] * (((r[i] - r[j]) * (rprime[i] - rprime[j])) < 0); ^ C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c mcfour.c -o mcfour.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c mct.c -o mct.o C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o GeneSelector.dll tmp.def kendall.o mcfour.o mct.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/GeneSelector.buildbin-libdir/GeneSelector/libs/x64 ** testing if installed package can be loaded Warning: Package 'GeneSelector' is deprecated and will be removed from Bioconductor version 3.9 * MD5 sums packaged installation of 'GeneSelector' as GeneSelector_2.31.2.zip * DONE (GeneSelector) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.9-bioc/R/library' package 'GeneSelector' successfully unpacked and MD5 sums checked In R CMD INSTALL